Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattctcacctccctatttcccatttcttgctaacag

Basic information

species Vitis vinifera
transcript Vv14s0030g01620.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g13530.1 (Oryza sativa), 5'ss of exon 3
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgta---agaagtgaataaatttgcagtggtacctttttct--ctcatttaactcattctcacctccctatttccca-tttcttgctaacag-----------
|||||  | |  |||||||| ||||||||| | ||||| ||||||||||||||||| ||  | |||||| |||| ||||| ||||||||    | |  |   | |      |||  ||   || |     | ||  | | ||||   | || | | |  |  |  | ||||||                
AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtctatatacttacctgaccgccaagttctattattataagagttataaaccgcattgctaactacatgtaactaaactgcttgcttgtgtcgattttgcag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G091383_T01 (Zea mays), 5'ss of exon 3
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaag---aagtgaataaatttg-cagtggtacct----ttttctctcatttaactcattctcacctccctatttcccatt--tcttgctaacag------------------------------------------------------
|| ||  | | ||||||||| ||||||||  | ||||| ||||||||||||||||| ||| | |||||| |||| ||||| ||||||||| |   |  || ||  || || | || ||  ||    ||    | |||||      |    |  ||  | | |  |  |  |  || ||| |                                                       
AACGGTCTTGCTACCAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcacttgcattcatctgactgttgtgtctaatattactgcgcatttggaatgtggggatttcattgtgtttctgtggttctgataaaaaaatagttattttttgcgtgtaactgctaatttttttgttggattggttttgcag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G171426_T01 (Zea mays), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaag--aagtgaataaatttgcagtggt-accttt--ttctctcatttaactcat--tctcacctccctatttc-ccatttcttgctaacag-------------------------------
|||||  | | ||| ||||| ||||||||  | ||||||||||||||| ||||||| ||| |||||||| |||| ||||| |||||||| ||  |  |  ||| | |   | |  | ||||     |||||  |  |  | ||  | |   ||  |  | || | | | ||| |  |                                  
AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAGGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagttatctacatacaatgatactccttacctgcagctctcttgtgcagtttatagtgtggacttaccgtgtcactagtgcttacatatgctaatgtaatatacactttctgtcttttacag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G151252_T01 (Zea mays), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattct--cacctccctatttcccatttcttgc---taacag
|||||  | | ||| ||||| ||||||||  | ||||||||||| ||| ||||||| ||| |||||||| |||| ||||| |||||||| ||   |  |   |  ||||||  | | | |     | || | ||| | | |  ||| |   || | |    ||   |    | ||||
AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatctactgacatgcagtcct-cttgtgaagtttatattacttactgtgccacgtgtgtaatacatgctttacgtcttttacag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G151252_T02 (Zea mays), 5'ss of exon 3
-------------AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattct--cacctccctatttcccatttcttgc---taacag
             |||||  | | ||| ||||| ||||||||  | ||||||||||| ||| ||||||| ||| |||||||| |||| ||||| |||||||| ||   |  |   |  ||||||  | | | |     | || | ||| | | |  ||| |   || | |    ||   |    | ||||
TTTGTATTGCCAGAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatctactgacatgcagtcct-cttgtgaagtttatattacttactgtgccacgtgtgtaatacatgctttacgtcttttacag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaa-gtgaataaatttg--cagtggtacctttt-tctctcatttaactcattctcacctccctatttcccatttcttgctaacag--
|| ||  | || |||||||| || ||||| |||||||||||||||||||| ||||||||  | |||||| | || || |||||||||||||    ||   ||  | |         ||||| || | |     ||   |||||   |       || |  ||| | ||| |       
AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgtagctagctataattttctttacctcttatgtgatccttgtttcattaaaattaaaacatatggcatgtattgttcgtgcag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G40530.1 (Glycine max), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaa----gaagtgaataa-atttgcagtggtacctttttctctcatttaactcattctcacctccctatttcccatttcttgctaacag--
|| ||  | || || ||||| || ||||| |||||||||||||||||||| ||||||||  | |||||| | || || |||||||||||||    | ||  |  || | ||    |     ||| | |  ||  ||   |||||   |       || |  ||| | | | |       
AACGGCCTTGACACTAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGCGGAGTAAAGAAGgtaattttgtagccatcaataattttccttacctcttatgcgatc-cttgtttcattaaaattataacatatgacatgtatggtttgtgcag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattctcacctccctatttcc--catttcttgcta--acag
|||||| | |||||||| || ||||| || |||||||||||||||||||| ||||||||  | |||||| | || || || |||||||||| |      |  |||        |   |||    || || ||| |  || |   ||       ||   ||||| ||  |    |||
AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaattgtgtattgttgactat-tgtttacagcttatataattttttatatactaatagcctctggcatttgttatttttgcag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G37190.2 (Glycine max), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattctcacctccctatttcccatttcttgctaacag-----
|||||| | ||||| || || ||||| || |||||||||||||||||||| ||||||||  | |||||| | || || || ||||||||||        |  |||        |   |||    || || ||| |   |   |      ||    |   |  ||| ||         
AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaattctgtattgttgactat-tgtttacagcttatataattttcttataaacaaataacctctggtgtttgttatttttgcag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G28060.1 (Arabidopsis thaliana), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgc---agtggtaccttt----ttctctcattta-actcattctcacctccctat-ttcccatttcttgctaacag---
|||||| | || |||||| | ||||| || ||||| || || |||||||||||||| ||| | |||||| |||| ||||| ||||||||||||       | | |  |   |    ||| |||    || |    |||   |   || |  | |  | || ||  ||||  ||  | |  |   
AATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagagaccaacactaaccagaaatctacatttgctattgttatgtttgtgcctgttttgtcttaacgatatttgcattgttttgtgagtgtag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S204_49V6.1 (Physcomitrella patens), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaag------tgaataaatttgcagtggtacctttttctctcatttaactcattctcacctccctatttcccatttcttgctaacag-------------------------------------------
|||||| |||  |||||||| |||||||| ||||||||||| |||||| | |||||  | ||||||||| || | ||||| ||||||||| |         ||| | ||||||     ||| || | |||   | |  |  |||      ||   ||  |  ||||   |||  | |                                            
AATGGACTGGCGACCAAGGTTGAGAAGTCCAGGAAGCAAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaatcgctgattgaatttggcagagtaactatctcttagaatccag-catatatgtcttt-tagatttcattaaatgcacaaatttaatgttttctgacgttattacacgtgattccttctctgcag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S13_236V6.1 (Physcomitrella patens), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaag-tgaataaatttgcagtggtacctttttctctca---tttaactcattctcacctccctatttcccatttcttgctaacag-------------------------------------------------------
|||||  ||| |||||||||||||||||| |||||||| || |||||| | |||||  | || |||||| || | ||||| ||||||||| |  | |   |    |||   ||| |  |      |  |   |  || | |   |  | |    |||    |  |     | |                                                          
AATGGTCTGGCTACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGCAAGAACCGTTCGAAGAAGATCAGGGGTGTGAAGAAGgtatgttgatatgtggcattgtcttggaatgtggcatccagaaagtgaaatttacattgtcatgtaaattgtgtagcttcgattgatgcagacgagtgtgtatgtgatgaagtgtcttacaaccttcatttggcttgactgcag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgcagtggtacctttttctctcatttaactca-ttctcacctccctatttcccatttcttgctaacag-------------------------------------------------------------------------------------------
||||||||||  ||||||||||||||||| |||||||| || |||||| | |||||  | || |||||| || | ||||| ||||||||       |  |  ||| |   ||| |   || ||     ||  | | | |||    ||    ||| |  |      |||| | |                                                                                           
AATGGATTGGCAACCAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGCAAGAACCGATCGAAGAAGATCAGGGGTGTGAAGAAGgtt-----cgttttcattcgt--tggaattattgtcctaagttatattaagttcaggtcttttcattactgaagctacgctaccggaggttatcatgttttctcctgcattcttattgtgcgtttatgagtatgtttacaatgaagtgtctcacgacctgcatttgcttggtcccag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S450_3V6.1 (Physcomitrella patens), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattctcacctccctatttcccatttcttgctaacag----------------------------------------------------------------------
|||||| |||  || |||||||||||||| |||||||| || |||||| | |||||  | || |||||| || | |||||||||||||||     |   |  ||| ||| |  ||  | ||  | | || ||  |||        | | |||||    | ||||  |  |||                                                                      
AATGGACTGGCAACAAAGGTCGAGAAGTCGAGGAAGCAGATCAAGGAGCGCAAGAACCGTTCGAAGAAGATCAGGGGTGTAAAGAAGgtacttgtttctttgattggcatttatag-tgttattttgatatag-tcacgtctctgtgcatattttgtgtgtcttcttttcagtctaatgttgtagtttagttcaacttgggtatcaaaacacgtctaacagccgtcatttttacggatgcag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ29464 (Selaginella moellendorffii), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattctcacctccctatttcccatttcttgctaacag
|| ||| | |  |||| ||   ||||||| ||||||||  | |||||||||||||| ||| |||||||| |||| || || ||||||||  |           |||       |  || | ||||||  || |     |  |     || |||                   
AACGGACTTGCAACCAGGGAGCAGAAGTCGAGGAAGCAGCTCAAGGAGAGGAAGAACAGGGCCAAGAAGATCCGCGGAGTGAAGAAGgtctgc----------tttctctctctctctctctctctccattgatgtgcttgcttgctcccattcag----------------

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ28032 (Selaginella moellendorffii), 5'ss of exon 4
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattctcacctccctatttcccatttcttgctaacag
|| ||| | |  |||| ||   ||||||| ||||||||  | |||||||||||||| ||| |||||||| |||| || || ||||||||  |   |   |   | |       |  || | ||||||  || |     |  |     || |||                   
AACGGACTTGCAACCAGGGAGCAGAAGTCGAGGAAGCAGCTCAAGGAGAGGAAGAACAGGGCCAAGAAGATCCGCGGAGTGAAGAAGgtctgctctctctctctctct----ctctctctctctctccattgatgtgcttgcttgctcccattcag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34550927|gb|CF519135.1|CF519135
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110362912|gb|EC926471.1|EC926471
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|30321070|gb|CD004332.1|CD004332
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|71866240|gb|DT015295.1|DT015295
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|33406884|gb|CF212511.1|CF212511
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|71872113|gb|DT021168.1|DT021168
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|18458660|gb|BM436938.1|BM436938
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|30135948|gb|CB921286.1|CB921286
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|37184145|gb|CF603499.1|CF603499
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|351029237|gb|FQ435437.1|FQ435437
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|71874519|gb|DT023574.1|DT023574
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110714825|gb|EE092178.1|EE092178
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110701352|gb|EE078828.1|EE078828
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAAGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110407407|gb|EC973007.1|EC973007
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|37187949|gb|CF607300.1|CF607300
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|33406976|gb|CF212603.1|CF212603
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|352785814|gb|FQ475817.1|FQ475817
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|46919451|gb|CN548780.1|CN548780
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110694122|gb|EE070954.1|EE070954
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|32458654|gb|CD799828.1|CD799828
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|71886870|gb|DT035925.1|DT035925
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|351053839|gb|FQ441605.1|FQ441605
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|32268605|gb|CD717764.1|CD717764
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110402749|gb|EC963356.1|EC963356
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|87585712|gb|DY474319.1|DY474319
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|32269613|gb|CD718772.1|CD718772
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110400221|gb|EC966773.1|EC966773
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110707923|gb|EE084876.1|EE084876
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|34319409|gb|CF372163.1|CF372163
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCG
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCG
EST: gi|351049488|gb|FQ429110.1|FQ429110
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110391519|gb|EC956500.1|EC956500
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|34416045|gb|CF414799.1|CF414799
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCG
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCG
EST: gi|77578503|gb|DV218045.1|DV218045
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|22007443|gb|BQ792477.1|BQ792477
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110701262|gb|EE078640.1|EE078640
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|161718020|gb|FC068553.1|FC068553
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|30253086|gb|CB970637.1|CB970637
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|30296070|gb|CB972864.1|CB972864
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110396446|gb|EC962132.1|EC962132
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|30253161|gb|CB970712.1|CB970712
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|87585035|gb|DY473961.1|DY473961
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|349813139|gb|FQ411379.1|FQ411379
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|71889488|gb|DT038543.1|DT038543
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|351026260|gb|FQ428272.1|FQ428272
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattctcacctccctatttcccatttcttgctaacag

- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG