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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGAAGCTCAATCAAATTGAGCTATCAGACTGTGAAATCTATGCCTCTTGTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaataccctacgtctcttcattttcttctaacgttaaccatcgtacattacagcaatttcctaatcatttttatccttcgtattgctcttttgccgcag

Basic information

species Vitis vinifera
transcript Vv14s0030g01610.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01610.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g14150.6 (Oryza sativa), 5'ss of exon 3
TAAGAAGCTCAATCAAATTGAGCTATCAGACTGTGAAATCTATGCCTCTTGTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaataccctacgtctcttcattttcttctaacgttaaccatcgtacattacagcaatttcctaatcatttttatccttcgtattgctcttttgccgcag
 || ||||||    |||| ||||| ||||| |||||||| || || ||||||||||| ||||||||||||||||||||  | ||||| ||  | || |||||||          |  |  |  ||||||  |||    |||||      ||| |||   || |    ||  | |||| |     |  |  |  ||  |  |||
CAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctg---------cacccgtcaattttc--ctacgcataacct-----catcacaaatatctgacgattttatttaacacaactgctaattcttcactacag

upper sequence: Vv14s0030g01610.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g61810.1 (Oryza sativa), 5'ss of exon 4
TAAGAAGCTCAATCAAATTGAGCTATCAGACTGTGAAATCTATGCCTCTTGTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaataccctacgtctcttcattttcttctaacgttaaccatcgtacattacagcaatttcctaatcatttttatccttcgtattgctcttttgccgcag
 || |||||     |||||||| | |||||||||||||| ||||| || ||||| |||||||||||||| || || ||| | ||||| ||| | ||||||||   | | || ||| |            |  ||  ||| ||| | | | | |  |||  || | |||| |    |||  |||  | ||||    ||| |   
CAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGATTAAGgtt--agttccttacct------------tattatggttcacc-tggaagaatgtagcttttgcttaattaacaatatttttc--aatgctgcaatgcag---

upper sequence: Vv14s0030g01610.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G840909_T02 (Zea mays), 5'ss of exon 4
TAAGAAGCTCAATCAAATTGAGCTATCAGACTGTGAAATCTATGCCTCTTGTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaataccctacgtctcttcattttcttctaacgttaaccatcgtacattacagcaatttcctaatcatttttatccttcgtattgctcttttgccgcag
 || |||||     |||||||||| || || |||||||| ||||| ||||||||||| ||||||||||| ||||||||| | ||||| ||  | |||||||| | | | |   ||     | ||| ||||||  | | ||   |   ||   |  ||||  || || ||       ||| |    | |||| |  ||| |   
CAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCATCTTGTGAGCCATGCCCAATGTGTTTTGGTGCTGTTCATCTATCCCGGATTAAGgt-tgatttcttaac----ttacatattcttcatatgatag--aatata---tggagcatgttactgatagca---atcttgttcaatgctgtactgcag---

upper sequence: Vv14s0030g01610.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G008216_T02 (Zea mays), 5'ss of exon 1
TAAGAAGCTCAATCAAATTGAGCTATCAGACTGTGAAATCTATGCCTCTTGTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaataccctacgtctcttcattttcttctaacgttaaccatcgtacattacagcaatttcctaatcatttttatccttcgtattgctcttttgccgcag
 || |||||     |||||||||| |||||||| ||||| || || || || ||||| ||||||||||||||||||||  | ||||| ||  |||| |||||     |||  |||   |||   |  |   ||||    ||  ||    |||  | | |  ||  | |   || |        |  |    || ||||  |||
CAAAAAGCTTGGGAAAATTGAGCTCTCAGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcg--tactttactgttctgactgattgcctaa----aatgattaagcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgcaacag

upper sequence: Vv14s0030g01610.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G008216_T04 (Zea mays), 5'ss of exon 2
TAAGAAGCTCAATCAAATTGAGCTATCAGACTGTGAAATCTATGCCTCTTGTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaataccctacgtctcttcattttcttctaacgttaaccatcgtacattacagcaatttcctaatcattttt--atccttcgtattgctcttttgccgcag--------------------------------------------------------------
 || |||||     |||||||||| |||||||| ||||| || || || || ||||| ||||||||||||||||||||  | ||||| ||  |||| |||||     |||  |||   |||   |  |   ||||    ||  ||    |||  | | |  ||  | |   || |   | | | | || | |||||    |  ||                                                              
CAAAAAGCTTGGGAAAATTGAGCTCTCAGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcg--tactttactgttctgactgattgcctaa----aatgattaagcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgcaacagaggctggtttatggggccaaggcagaggctgccatcgccattggatttgatgacttcattgcag

upper sequence: Vv14s0030g01610.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G37210.1 (Glycine max), 5'ss of exon 4
TAAGAAGCTCAATCAAATTGAGCTATCAGACTGTGAAATCTATGCCTCTTGTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaataccctac-gtctcttcattttcttctaacgttaaccatcgtacattacagcaatttcctaatcatttttatccttcgtattgctcttttgccgcag
| | ||||| ||||||||||| ||  | ||||||||||||||||| ||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||     |   | || | | |   |||    | |  |  | ||||        |  || | ||    ||    |   ||  ||| |     ||   |    |||
TCAAAAGCTGAATCAAATTGAACTTGCTGACTGTGAAATCTATGCTTCTTGCGAGCCTTGTCCAATGTGCTTTGGTGCAATTCATCTTTCAAGAATTAAGgtgagcctctgccacagccacactattcatattttcctctcaccacatgtttctctagtatttattaaaatgatcacattgttcattcctttcacatcaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110392295|gb|EC957614.1|EC957614
EST:     GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAG                         AGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
genomic: GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaatac ... tttgccgcagAGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
EST: gi|110708135|gb|EE085328.1|EE085328
EST:     GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAG                         AGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
genomic: GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaatac ... tttgccgcagAGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
EST: gi|110363177|gb|EC926749.1|EC926749
EST:     GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAG                         AGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
genomic: GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaatac ... tttgccgcagAGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
EST: gi|110695405|gb|EE073382.1|EE073382
EST:     GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAG                         AGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
genomic: GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaatac ... tttgccgcagAGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
EST: gi|34361753|gb|CF403338.1|CF403338
EST:     GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAG                         AGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
genomic: GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaatac ... tttgccgcagAGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
EST: gi|110384122|gb|EC948538.1|EC948538
EST:     GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAG                         AGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
genomic: GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaatac ... tttgccgcagAGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
EST: gi|110401148|gb|EC967744.1|EC967744
EST:     GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAG                         AGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
genomic: GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaatac ... tttgccgcagAGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
EST: gi|26261545|gb|CA812608.1|CA812608
EST:     GTGAGCCTTGCCCAATGTGCTTTGGTGCTGTACGTCTTTCAAGAATTAAG                         AGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
genomic: GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaatac ... tttgccgcagAGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
EST: gi|26262618|gb|CA813681.1|CA813681
EST:     GTGAGCCTTGCCCAATGTGCTTTGGTGCTGTACGTCTTTCAAGAATTAAG                         AGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC
genomic: GTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAATTAAGgtctaaatac ... tttgccgcagAGATTGGTCTATGGGGCCAAAGCTGAAGCAGCTATAGCTATTGGATTCGAC