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AGTTGCAGCTGGGTGGCCGTCTTGGTTATCGGATGTTGCAGGGCCAGCACTTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAGgtgggtcattttgttgaatggaaaatgatattctttgcctctcggatgatgtgataatgtggtatttgagactaatggtagaacaatggttcattttttc...
species | Vitis vinifera |
transcript | Vv14s0030g01260.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAG ATTGGACAAGGAACATATAGCAATGTGTATAAAGCTAGAGATATGTTAACGEST: gi|71862261|gb|DT011316.1|DT011316
genomic: TTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAGgtgggtcatt ... gtattgatagATTGGACAAGGAACATATAGCAATGTGTATAAAGCTAGAGATATGTTAACG
EST: TTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAG ATTGGACAAGGAACATATAGCAATGTGTEST: gi|71860177|gb|DT009232.1|DT009232
genomic: TTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAGgtgggtcatt ... gtattgatagATTGGACAAGGAACATATAGCAATGTGT
EST: TTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAG ATTGGACAAGGAACATATAGCAATGTGTATAAAGCTAGAGATATGTTAACGEST: gi|71862544|gb|DT011599.1|DT011599
genomic: TTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAGgtgggtcatt ... gtattgatagATTGGACAAGGAACATATAGCAATGTGTATAAAGCTAGAGATATGTTAACG
EST: TTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAG ATTGGACAAGGAACATATAGCAATGTGTATAAAGCTAGAGATATGTTAACGEST: gi|71864831|gb|DT013886.1|DT013886
genomic: TTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAGgtgggtcatt ... gtattgatagATTGGACAAGGAACATATAGCAATGTGTATAAAGCTAGAGATATGTTAACG
EST: TTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAG ATTGGACAAGGAACATATAGCAATGTGTATAAAGCT
genomic: TTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAGgtgggtcatt ... gtattgatagATTGGACAAGGAACATATAGCAATGTGTATAAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGCAGCTGGGTGGCCGTCTTGGTTATCGGATGTTGCAGGGCCAGCACTTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAGgtgggtcattttgttgaatggaaaatgatattctttgcctctcggatgatgtgataatgtggtatttgagactaatggtagaacaatggttcattttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaacaa