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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGAAAACAAGGACTTGTTCTCTAAAAGTgtatgtactcagaacccatgacttagagcattttgttacttataggtgcattgatttgtgtttgggtgttaaatttttctcatctttttttttttctttattag

Basic information

species Vitis vinifera
transcript Vv14s0030g00600.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00600.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 6
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGAAAACAAGGACTTGTTCTCTAAAAGTgtatgtactcagaacccatgacttagagcattttgttacttataggtgcattgatttgtgtttgggtgttaaatttttctcatctttttttttttctttattag
| | ||||| ||||| || || || ||||||||||||| |||  ||||| |  | || | |||| | |||||||| ||||||||||| ||||||||||||||||| | ||    ||||    || |   ||||   | | | |  ||   ||  ||  |       |   |||  | |||||| ||  ||||| |         
AATTACTGTTCATGCTGAAGAGACCGTTGCTTCAAGGAGTGCAGTTGAGATGGTCTTACGTTGTACTCACTTGGATAACAAGGACTTTTTCTCTAAAAGTgtatgcattctattcccacatgtt-gcctatttaagtgcatgtttgttttttatttgattggccttttggaaaaatctctcatattcgtttttcttgcag----

upper sequence: Vv14s0030g00600.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGAAAACAAGGACTTGTTCTCTAAAAGTgtatgtactcagaacccatgacttagagcattttgttacttataggtg-cattgatttgtgtttgggtgttaaatttttctcatctttttttttttctttattag
|||| || |||| || || |||||||||||||| |  | ||    |||| |||  || |  |||    | ||||| |||||||||||||||||||| |||||| ||||    |||  |||        |||| |  | ||| |||||  || |  | ||  ||   |    |  |||  ||  |  | || ||||   ||  |||
ACTCTCTATCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATTAATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTgtacgtac---aaacttatg--------cattcttgtccttctaggtaacaatattatgatttcttgcagaagctttaacttgttatcttattttctctttctag