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CCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATTTAATAGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAGgtatgtttattttacttgctttcctcatttattctttaaaaattggtcttgcatcctgtggtagcttcacttcttgctgttaactcattgaaaataagtt...
species | Vitis vinifera |
transcript | Vv14s0006g01660.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCAGGCCTGGAAGAGAATAGCTTATTATACTATACCCATTTGTTAACAG GTTATATTGGTTCTGTTTCTTTTTTGAACGCAGTATTAGAAGTTGTCCATAEST: gi|110715098|gb|EE092763.1|EE092763
genomic: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAGgtatgtttat ... gtattttcagGTTATATTGGTTCTGTTTCTTTTTTGAACGCGGTATTAGAAGTTGTCCATA
EST: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAG GTTATATTGGTTCTGTTTCTTTTTTGAACGCGGTATTAGAAGTTGTCCATAEST: gi|71859315|gb|DT008370.1|DT008370
genomic: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAGgtatgtttat ... gtattttcagGTTATATTGGTTCTGTTTCTTTTTTGAACGCGGTATTAGAAGTTGTCCATA
EST: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAG GTTATATTGGTTCTGTTTCTTTTTTGAACGCGGTATTAGAAGTTGTCCATAEST: gi|294966903|gb|GW839778.1|GW839778
genomic: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAGgtatgtttat ... gtattttcagGTTATATTGGTTCTGTTTCTTTTTTGAACGCGGTATTAGAAGTTGTCCATA
EST: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAG GTTATATTGGTTCTGTTTCTTTTTTGAACGCGGTATTAGAAGTTGTCCATAEST: gi|37186505|gb|CF605858.1|CF605858
genomic: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAGgtatgtttat ... gtattttcagGTTATATTGGTTCTGTTTCTTTTTTGAACGCGGTATTAGAAGTTGTCCATA
EST: AGCAGGCCTGGAAGAGAATAGCTTATTATACTATACCCATTTGTTAACAG GTTATATTGGTTCTGTTTCTTTTTTGAACGCAGTATTAGAAGTTGTCCATAEST: gi|71863971|gb|DT013026.1|DT013026
genomic: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAGgtatgtttat ... gtattttcagGTTATATTGGTTCTGTTTCTTTTTTGAACGCGGTATTAGAAGTTGTCCATA
EST: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAG GTTATATTGGTTCTGTTTCTTTTTTGAACGCAGTATTAGAAGTTGTCCATAEST: gi|71859789|gb|DT008844.1|DT008844
genomic: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAGgtatgtttat ... gtattttcagGTTATATTGGTTCTGTTTCTTTTTTGAACGCGGTATTAGAAGTTGTCCATA
EST: AGCAGGCCTGGAAGAGAATAGCTTATTATACTATACCCATTTGTTAACAG GTTATATTGGTTCTGTTTCTTTTTTGAACGCAGTATTAGAAGTTGTCCATAEST: gi|161712131|gb|FC061503.1|FC061503
genomic: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAGgtatgtttat ... gtattttcagGTTATATTGGTTCTGTTTCTTTTTTGAACGCGGTATTAGAAGTTGTCCATA
EST: AGCAGGCCTGGAAGAGAATAGCTTATTATACTATACCCATTTGTTAACAG GTTATATTGGTTCTGTTTCTTTTTTGAACGCAGTATTAGAAGTTGTCCATA
genomic: AGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAGgtatgtttat ... gtattttcagGTTATATTGGTTCTGTTTCTTTTTTGAACGCGGTATTAGAAGTTGTCCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATTTAATAGCAGGCCTGGAAGAGAATAACTTATTATACTATACCCATTTGTTAACAGgtatgtttattttacttgctttcctcatttattctttaaaaattggtcttgcatcctgtggtagcttcacttcttgctgttaactcattgaaaataagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa