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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGAGGCTACAGTGAGGACATGATTCCAACTgtaggtatctttatccggggttaaattgaatttcacattgtatgatccttagttcttagatatcttatcagggattcttggctctgacaaacag

Basic information

species Vitis vinifera
transcript Vv14s0006g01090.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G089454_T01 (Zea mays), 5'ss of exon 3
ACAGGAGGCTACAGTGAGGACATGATTCCAACTgtaggtatctttatccggggttaaattgaatttcacattgtatgatccttagttcttagatatcttatcagggattcttggctctgacaaacag
||||| |||||||||||||||||||||||||||||| |||  |  |  |    |     |  || | |   || |  |  ||| ||| |   ||   | | |    || ||   || |||  |||||
ACAGGTGGCTACAGTGAGGACATGATTCCAACTgtatgtacatacaaacactttc----tttatgttatcctgaacaaatcttggttatctaat---tcacctaaaatgctcatctgtga--aacag

upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G089454_T03 (Zea mays), 5'ss of exon 2
-------------------------------------------------------------------ACAGGAGGCTACAGTGAGGACATGATTCCAACTgtaggtatctttatccggggttaaattgaatttcacattgtatgatccttagttcttagatatcttatcagggattcttggctctgacaaacag
                                                                   ||||| |||||||||||||||||||||||||||||| |||  |  |  |    |     |  || | |   || |  |  ||| ||| |   ||   | | |    || ||   || |||  |||||
TCAGTCAAGATACATTACCATGTTATCTGGTGTTTTGATTTTAATTCATGGCTTCTGTGCTTTGCAGACAGGTGGCTACAGTGAGGACATGATTCCAACTgtatgtacatacaaacactttc----tttatgttatcctgaacaaatcttggttatctaat---tcacctaaaatgctcatctgtga--aacag

upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G171060_T02 (Zea mays), 5'ss of exon 4
ACAGGAGGCTACAGTGAGGACATGATTCCAACTgtaggtatctttatccggggttaaattgaatttcacattgtatgatccttagttcttagatatcttatcagggattcttggctctgacaaacag
||||| |||||||||||||||||||||||||| ||| |||  |  || |    |     ||   | |  |    |  ||| ||  |   ||  |     ||| |  || |     ||||  ||||||
ACAGGTGGCTACAGTGAGGACATGATTCCAACGgtatgtacatacatacactttctttatggtgtccttaacaaa-aatctttgttatctaagtg----atctgaaatgccca--tctgcgaaacag

upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G41170.1 (Glycine max), 5'ss of exon 3
ACAGGAGGCTACAGTGAGGACATGATTCCAACTgtaggtatctttatccggggttaaattgaatttcacattgtatgatcctt--agttcttagatat-cttatcagggattcttggctctgacaaacag------------
|| || |||||||||||||||||||||||||||||  |||||| | |  |   ||  |||| || |   || ||   ||  ||  || |  |    ||  ||  |   |    |    | | |      |            
ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctatctttgctttttgattgcatcttgaatggttacatgtttgaagattgtgagcatgtttgcctttgtaattgaaatataattcttggtgttaaacccag

upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G39540.1 (Glycine max), 5'ss of exon 3
ACAGGAGGCTACAGTGAGGACATGATTCCAACTgtaggtatctttatccggggttaaattgaatttcacattgt----------atgatccttag--ttcttagatatcttatcaggg----attcttggctctgacaaacag
|| || |||||||||||||||||||||||||||||  ||||||   |  |   ||  ||||||| |   |||||          |||||  | ||  |  ||   | | | ||         ||||||||   | | |  |||
ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctagctttgctttttgattgaatcttgaattgttgcatatttgatgattgtgagcatgtttgcctttgtaattgaaatataattcttggtgttaa-acgcag