1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCATTTATTGGTTTCCTTAAAAGCAAAGACCCCAGTGATGGGACAGAGCAGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttctacttcatttattttttcagtttcaatggtgagataaggctatcaattacttataatgataattgttgttgcttttaacttattcagcct...
species | Vitis vinifera |
transcript | Vv14s0006g00630.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAA-T GGCCCTTTTATCAATGGGAAAGAC-TATCTGCTGTTGACTTGTCTCTTGGGEST: gi|349817724|gb|FQ407713.1|FQ407713
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGG-
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGAEST: gi|33402764|gb|CF208391.1|CF208391
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGAEST: gi|26265541|gb|CA816604.1|CA816604
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGAEST: gi|351024071|gb|FQ423494.1|FQ423494
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGAEST: gi|33404427|gb|CF210054.1|CF210054
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGAEST: gi|349826855|gb|FQ418946.1|FQ418946
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGAAEST: gi|110691855|gb|EE070437.1|EE070437
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGAEST: gi|351046545|gb|FQ453161.1|FQ453161
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGNNNNNNNTATCTGCTGTTGACTTGTCTCTTGGAEST: gi|294966595|gb|GW837730.1|GW837730
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTT-ATCAATGGGAAAEST: gi|77577773|gb|DV217632.1|DV217632
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGAEST: gi|26261684|gb|CA812747.1|CA812747
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGAEST: gi|26263937|gb|CA815000.1|CA815000
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGAEST: gi|349809187|gb|FQ398960.1|FQ398960
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGAEST: gi|349827950|gb|FQ422818.1|FQ422818
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGAEST: gi|349814904|gb|FQ410127.1|FQ410127
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
EST: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAAT GGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
genomic: AGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttc ... gtgcttaaagGGCCCTTTTATCAATGGGAAAGACATATCTGCTGTTGACTTGTCTCTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATTTATTGGTTTCCTTAAAAGCAAAGACCCCAGTGATGGGACAGAGCAGACATTACTGAACGAGCTAGCTTCTTTTGATGATTATATAAAAGAAAATgtgagtcttctacttcatttattttttcagtttcaatggtgagataaggctatcaattacttataatgataattgttgttgcttttaacttattcagcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagataa