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GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAGgtttgatttacttcttttgttactttattagtttccatccctaaaatttctttcttttcttttttggtgtttttccccattcccaatagtgtgttgaatt...
species | Vitis vinifera |
transcript | Vv13s0156g00180.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAG GAACGCCTGAAGAAACTGAAGGCAGAATGTGGAAAGATTCAACTAGGGAATEST: gi|161710026|gb|FC060587.1|FC060587
genomic: GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAGgtttgattta ... gggattgcagGAACGCCTGAAGAAACTGAAGGCAGAATGCGGAAAGATTCAACTAGGGAAT
EST: GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAG GAACGCCTGAAGAAACTGAAGGCAGAATGCGGAAAGATTCAACTAGGGAATEST: gi|161718322|gb|FC064764.1|FC064764
genomic: GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAGgtttgattta ... gggattgcagGAACGCCTGAAGAAACTGAAGGCAGAATGCGGAAAGATTCAACTAGGGAAT
EST: GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAG GAACGCCTGAAGAAACTGAAGGCAGAATGCGGAAAGATTCAACTAGGGAATEST: gi|161710757|gb|FC059399.1|FC059399
genomic: GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAGgtttgattta ... gggattgcagGAACGCCTGAAGAAACTGAAGGCAGAATGCGGAAAGATTCAACTAGGGAAT
EST: GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAG GAACGCCTGAAGAAACTGAAGGCAGAATGTGGAAAGATTCAACTAGGGAAT
genomic: GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAGgtttgattta ... gggattgcagGAACGCCTGAAGAAACTGAAGGCAGAATGCGGAAAGATTCAACTAGGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAGgtttgatttacttcttttgttactttattagtttccatccctaaaatttctttcttttcttttttggtgtttttccccattcccaatagtgtgttgaatt
- - - - - - - TTGAAG
- - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccc