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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCCAGCAAAATTTGAATTCATGACCAGGCGTAAAGGGCATGAAAGGGTTATGGAATCAATTCACACAGCTATAGACCTTGGGTATAATCCTGTTAAGgtatgttttgtcttttcaatttatgattgcatgcctttccttgctaaaatctgttcttttagatagtttctctttctgccaaagtaatattaggtcttattcattaggtcttattcattgtcttttataatgcaagattaaaacatattttccttccattcattctgtacgctgtctcag

Basic information

species Vitis vinifera
transcript Vv13s0156g00170.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0156g00170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G16780.1 (Glycine max), 5'ss of exon 2
GGTTCCAGCAAAATTTGAATTCATGACCAGGCGTAAAGGGCATGAAAGGGTTATGGAATCAATTCACACAGCTATAGACCTTGGGTATAATCCTGTTAAGgtatgttttgtcttttca--atttatgattgcatgcctttccttgctaaaatctgttcttttagatagtttctctttctgccaaagtaatattaggtcttattcattaggtcttattcattgtcttttataatgcaagattaaaacatattttccttccattcattctgtacgctgtctcag
 || |||||||| ||||| || ||||| || || |||||||||||||  || ||||| |||||| |  |||| ||||||||||| | |||||| |||||||||| | |||   ||  |  |||  |  ||||| |  ||    |  ||  | ||  ||   |    || | |  ||| | ||||| |   |||| ||  |||||                                                                              
AGTACCAGCAAAGTTTGAGTTTATGACAAGACGCAAAGGGCATGAAAAAGTAATGGATTCAATTAATGCAGCCATAGACCTTGGATTTAATCCAGTTAAGgtatttcttggtcttatattattactttttgcaagttttcttcttttatcacct--tcccatgagcagctacctttttt-ccaaatt--cattaagt--tattcgaa---------------------------------------------------------------------------

upper sequence: Vv13s0156g00170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G31955.1 (Arabidopsis thaliana), 5'ss of exon 2
GGTTCCAGCAAAATTTGAATTCATGACCAGGCGTAAAGGGCATGAAAGGGTTATGGAATCAATTCACACAGCTATAGACCTTGGGTATAATCCTGTTAAGgtatgttttgtcttttcaatttatgattgcatgcctttccttgctaaaatctgttcttttagatagtttctctttctgccaaagtaatattaggtcttattcattaggtcttattcattgtcttttataatgcaagattaaaacatattttccttccattcattctgtacgctgtctcag
|||||||||||| ||||| ||  |||| || |||||||||||||| ||||||||| |||| ||| | || ||||| || ||||| || |||||||| || ||||||||  |  |     || ||| || | ||  |     |   | ||   | | |||  |||  |      || |  ||||    | || | | | |                                                                                 
GGTTCCAGCAAAGTTTGAGTTTCTGACTAGACGTAAAGGGCATGATAGGGTTATGAAATCGATTGATACTGCTATTGAGCTTGGATACAATCCTGTGAAAgtatgtttattaatccttcttcatgttttc-tgtttgaatgtagcagaac--gatattt--gatgttcaagagtttttgcaaatcgttcttggttttgacag------------------------------------------------------------------------------