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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGCTGCTGCATTTAGCTGGATTACTGGAATTTTTTCTGCTTCACATGTCTTGGGAAATGTTCTAGCACGTTTTCTTCCTGAAAAGTACATTTTTGAGgtatatcagtgctgtaactctataattagctttaaactgattctgtacttcattaattttgtcatatcctcctactaatgaagccttttgtgtttcag

Basic information

species Vitis vinifera
transcript Vv13s0106g00610.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0106g00610.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G32810.1 (Glycine max), 5'ss of exon 8
--GAGGGCTGCTGCATTTAGCTGGATTACTGGAATTTTTTCTGCTTCACATGTCTTGGGAAATGTTCTAGCACGTTTTCTTCCTGAAAAGTACATTTTTGAGgtatatcagtgctgtaactctataattagctttaaactgattctg----tacttcattaattttgtcatatcctcctactaatgaagcct-tttgtgtttcag--------
   ||||| || | |||||| |||||||||||  |  ||||||||||||| ||  | ||  |||| || ||  | | ||||||||||||||||||||||| ||||| || |||  || | |     ||||   || |  |  ||| |    ||   ||||  |||  |  |  ||   |  ||||||| | | |||    || |         
AAAAGGGCAGCAGTATTTAGTTGGATTACTGG--TCCTTTCTGCTTCACACGTTCTAGGGGATGTACTGGCTTGGTCTCTTCCTGAAAAGTACATTTTTGCGgtatgtctgtgtggtgagttctacattaatgttcactttgttcagatcatatcacatttttttcatacttcccctttgataatgaatcttatttacagttaatgatttcag

upper sequence: Vv13s0106g00610.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G34820.1 (Glycine max), 5'ss of exon 4
GAGGGCTGCTGCATTTAGCTGGATTACTGGAATTTTTTCTGCTTCACATGTCTTGGGAAATGTTCTAGCACGTTTTCTTCCTGAAAAGTACATTTTTGAGgtatatcagtgctgtaactctataattagctttaaactgatt---ctgtacttcattaattttgtcatatcctcctactaatgaagcct-tttgtgtttcag---------
 ||||| || | |||| | |||||||||||  |  ||||||||||||||||  ||||  |||| || ||  | | ||||||||||||||||||||||| ||||| || |||  || | |     ||||   || |  || |    |  ||   ||||  |||  |  |  ||   |  |||| || | | |||    || |          
AAGGGCAGCAGTATTTGGTTGGATTACTGGTCTCCTTTCTGCTTCACATGTTCTGGGGGATGTACTGGCTTGGTCTCTTCCTGAAAAGTACATTTTTGCGgtatgtctgtgtcgtgagttctacattaatgttcacttgttcagaccatatcacatttttttcatacttcccctttgataataaatcttatttacagtttaatgattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715805|gb|FC065160.1|FC065160
EST:     TCTTGGGAAATGTTCTAGCACGTTTTCTTCCTGAAAAGTACATTTTTGAG                         GTGTCAATAGCCCTCTTAAT
genomic: TCTTGGGAAATGTTCTAGCACGTTTTCTTCCTGAAAAGTACATTTTTGAGgtatatcagt ... tgtgtttcagGTGTCAATAGCCCTCTTAAT