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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag

Basic information

species Vitis vinifera
transcript Vv13s0106g00570.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G30830.1 (Glycine max), 5'ss of exon 13
CCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgt-aatg-aaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
|||||||||||||||||||||||||| ||||||||  ||||  ||||||||| ||||||||| || ||||| ||||||| |  | |||    |   || ||  || ||||  ||   | ||  | | |||   ||| || | || ||||   |    | ||   |||                  
CCTGCCCATGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagatttaaatagttttactcatattgccgatgtaagatatgtatgtttttctttgcttttgtag-----------------

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 13
CCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
|||||||| ||||||||||||||||| ||||||||  ||||  ||||||||| ||||||||| || ||||| ||||||| |  | |||    |   || ||  || |||           ||  |||||    | | |    | |||   ||  |||     ||     || || |||| |||
CCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagattc----------aatagttttac--tcatatagccgatg---taagatatgtatgtttttctt-tgcttttgtag

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G01710.1 (Glycine max), 5'ss of exon 13
CCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatct-tcagaaaaattttctact--acatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
|||||||||||||| ||||||||||| ||||||||  |||| ||||| |||  | ||||||| || ||||| ||||||  |  | | |||  |    | |  |||  ||||||||| | | | || |    ||||||  |    | | | | ||    |      | |                  
CCTGCCCATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtttgtcatgatttctctagacttgacatttttactcaaa-aatctggctgtaatttatgcttat-taatattccttttctttgcag-----------------

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 13
CCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttat-ataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
||||| |||||||| ||||||||||| ||||||||  |||| ||||| |||  | ||||||| || ||||| ||||||  |  | | |  |  | |     |||||  |    | ||  |  ||     | | |  |||| | ||||           ||| ||                    
CCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAGgtattttctttacc-atgagtccatgactactctagagtctaagactaaaacaatttcactaaaaaaactattctccttttctctgcag--------------------

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 13
CCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
||||| |||||||| || ||||| || ||||||||| || ||||||||||| || |||| || ||||| ||||| |||||||   |     | || | ||| |||  |   | || |  |   |  |  | |||   |   | | |    |    ||                          
CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAgtaaatcccat-----agaactctct-ctatgtccattttaacttcttctctcagaaatctgattctttttcgcttgatgtag-------------------------