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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTAGGGCACAATGATCAGAAAGTTCTTGTTCTTGCAGCCACAAACACTCCCTATTCCCTGGATCAGgtgagaaaaatcttatcttgtagaactaactttacctatctgagattgtcagaattgctacttttgggctaaagttaaagtgacttgcag

Basic information

species Vitis vinifera
transcript Vv13s0106g00490.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0106g00490.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g06490.1 (Oryza sativa), 5'ss of exon 4
GGTGTAGGGCACAATGATCAGAAAGTTCTTGTTCTTGCAGCCACAAACACTCCCTATTCCCTGGATCAGgtgagaaaaatcttatcttgtagaactaactttacctatctgagattg----tcagaattgctacttt-tgggctaaagttaaagtgacttgcag----------------
||||| || || || ||| | ||||| ||||||||||| |||||||||||||| ||| | |||||||||||   |   |    |  |     |  || || | ||  |   |  |||    ||     || || | | |  |||  ||| |   |||      |                
GGTGTTGGACATAACGATGATAAAGTCCTTGTTCTTGCTGCCACAAACACTCCATATGCTCTGGATCAGgtagaacttacaagacatccatcagttatctcttccagttacattttgcatctcgtttgtgttattgtataagcttgagtgatgatgatcgatcgatcttctttttcccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721606|gb|FC070816.1|FC070816
EST:     AGAAAGTTCTTGTTCTTGCAGCCACAAACACTCCCTATTCCCTGGATCAG                         GCCATCCGACGGCGATTTGACAAGCGAATCTACATTCCTCTTCCAGATTTG
genomic: AGAAAGTTCTTGTTCTTGCAGCCACAAACACTCCCTATTCCCTGGATCAGgtgagaaaaa ... tgacttgcagGCCATCCGACGGCGATTTGACAAGCGAATCTACATTCCTCTTCCAGATTTG
EST: gi|110685200|gb|EE063347.1|EE063347
EST:     AGAAAGTTCTTGTTCTTGCAGCCACAAACACTCCCTATTCCCTGGATCAG                         GCCATCCGACGGCGATTTGACAAGCGAATCTACATTCCTCTTCCAGATTTG
genomic: AGAAAGTTCTTGTTCTTGCAGCCACAAACACTCCCTATTCCCTGGATCAGgtgagaaaaa ... tgacttgcagGCCATCCGACGGCGATTTGACAAGCGAATCTACATTCCTCTTCCAGATTTG