Sequence
atgc intronic sequence ATGC exonic sequenceGAGTTGTTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaaattccacatggaaacagccttttttttccctggtattccagctaattctagcacattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g16600.1 (Oryza sativa), 5'ss of exon 4
GAGTTGTTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaaattccacatggaaacagccttttttttccctggtattccagctaattctagcacattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaag
| ||||||||||| ||||||||||||||||| || | ||||||||| || | || || ||||||| ||||||||||| | ||||||||||| ||| | | || | | ||| | | | || | | ||||| | || | | || || ||||| || |||| |
ATACAACTTGAGAAGATTGCCCCTACATGGATGAATGTATCGATTCAAATGAAAGAAGATCAGGAGACAGATAAAGCTTTTGGATGGGTCTTGGAAATgtgaga----attacgcttgtgtata--------ttttcataatgcatttacttgct-tgttacattgttatgattccagg-----ttcttgtttttacttgacttctag-------
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G37490.3 (Glycine max), 5'ss of exon 5
GAGTTGTTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaaattccacatggaaacagccttttttttccctggtattccagctaattctagcacattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaag
|| ||| | | |||||||| || |||||||||||| ||||||||| |||||||| |||||||| |||||||||| |||||||||||||||||||||| | | | ||| | | ||||| || | | | || | | |||| | ||| | | | |||||||| || | |||| |||
GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtctta---ccaaacaactgatagatatttttgttctagaagaggtattggaactg--ataatttgat-------acattatgctaatggtttttttc--ttgtggaaccaag
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G26610.1 (Glycine max), 5'ss of exon 5
GAGTTGTTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaaattccacatggaaacagccttttttttccctggtattccagctaattctagcacattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaag
|| ||| | | |||||||| || |||||||||||| ||||||||| |||||||| || ||||| |||||||||| |||||||||||||||||||||| | | | | || | ||||| || | | | | || | ||| | ||| | || | |||||| || | || | |||
GATTTGATTGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGATCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaaaaatctgatagatatttttgttt--tagaagaggtattggaactgatagttttctgcttta----------tgttaatgattttttttcttgtggagccaag
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 5
GAGTTGTTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaaattccacatggaaacagccttttttttccctggtattccagctaattctagcacattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaag
|| | | || |||||||| ||||||||||||||||| || ||| ||||||| | || |||||||||||||| | ||||||||||||||| ||||||| || |||| | || || | || || | | | | | | | | | || |||| || ||| || || | | | | || | ||
GAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATgttag---------cacaagaaacaagaatcttaaatcatgaattggctctccaccttttgaa--tcccatcattgttaactgactactttattcttctcttttctgtttgataag-
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S48_116V6.1 (Physcomitrella patens), 5'ss of exon 4
GAGTTG-TTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaa-----attccacatggaaacagccttttttttccctggt-attccagctaattctagcacattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaag
||| || |||||| | || || |||||| | || || | | ||||| ||||||||||||||||| |||| |||||| ||||| |||||||||| | ||| | | || || |||| || | | | | || ||| | ||| || || | | | || || | | || ||
-AGTCAATTAGAGAAGGTAGCCCCAACATGGTCAGACGTGTCCATCAAGATGAAGGATGACCCAGAAACTGACAAAGCATTTGGTTGGGTTTTAGAAATgtgcgtgaaattctaaccctgtttgcttgcactagttttattacttatttagtctgatacattgttcagcatctttgtactgtgatttaactgacgttgggaatgcttattgtatggtag---
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S145_88V6.1 (Physcomitrella patens), 5'ss of exon 4
GAGTTG-TTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaaattccacatggaaacagccttttttttccctggtattccagctaattctagcacattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaag----------------
||| | |||||||| || || |||||| | || || | | ||||||||||||||||||||||| |||| |||||| ||||| || |||||||| | ||| ||| || | | || || || | || || |||| ||||| ||| || ||| ||| | | ||| || ||| | | |
-AGTCAACTAGAGAAGATAGCTCCAACATGGTCTGACGTGTCCATCAAGATGAAAGATGACCCAGAAACTGACAAAGCATTTGGTTGGGTTCTGGAAATgtgcgtgaaatttcaaccttgg--tagtctgcgcaagtttctgtctggtagttagc-ctagtacatt-----gtttgtcg---cctctttgctgtgctttggctaatttggaggatgtgcattgtatgagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30128013|gb|CB913352.1|CB913352EST: ATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAAT GTATGCATATGCAGTAGCATCTGCCTTGCATGGCGTGCAGCATATTCTTCA
genomic: ATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaa ... ttgaacaaagGTATGCATATGCAGTAGCATCTGCCTTGCATGGCGTGCAGCATATTCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGTTGTTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaaattccacatggaaacagccttttttttccctggtattccagctaattctagcacattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG