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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATAGACGCTTCTCTCCATGGAAAGGATCAGTGGTTGACTCCGTCATAGGAGTATTTCTTACCCAGAATGTTTCAGACCACCTTTCTAGgtatacttgaggttttagttcagtaacaagatcaaaaccctcttgattaacatttgaagtttatataaatggattattacactaacttctttcttgccatgcag

Basic information

species Vitis vinifera
transcript Vv13s0074g00450.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G32960.1 (Glycine max), 5'ss of exon 9
GAGATAGACGCTTCTCTCCATGGAAAGGATCAGTGGTTGACTCCGTCATAGGAGTATTTCTTACCCAGAATGTTTCAGACCACCTTTCTAGgtatacttgaggttt---tagttcagtaacaagatcaaaaccctcttgattaacat---ttgaagtttatataaatggattattacactaacttctttcttgccatgcag
||||||||||||| ||    ||||||||||| || |||||||| || ||||| || || || || ||||||||||||||||| ||||| ||||| |||  |  |     ||| |   || |    |||  |    |     ||  |     ||| |   |    ||  ||  | |  | |   |  || ||| |  |||||
GAGATAGACGCTTTTCAAAGTGGAAAGGATCTGTTGTTGACTCGGTGATAGGTGTTTTCCTCACTCAGAATGTTTCAGACCATCTTTCAAGgtaaactaaatatcaaagtaggtgtttatctcactcaggattgccaatgctagaacaggatgatgagcaacccaacagaaaaattta-tgcttctttcctttctttgcag

upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G34600.1 (Glycine max), 5'ss of exon 6
GAGATAGACGCTTCTCTCCATGGAAAGGATCAGTGGTTGACTCCGTCATAGGAGTATTTCTTACCCAGAATGTTTCAGACCACCTTTCTAGgtatacttgaggttttagttcagta----acaagatcaaaaccctct-------tgattaacatttgaagtttat-ataaatggattattacactaactt-------ctttcttgccatgcag
||||||||||||| ||    ||||||||||| || |||||||| || ||||| || || || || |||||||||||||| || ||||| |||||  ||  |  |  ||  |  ||      |    |||  |  ||         |    ||   | |||  | || || |       |  | |  || ||        || ||| |  |||||
GAGATAGACGCTTTTCAAAGTGGAAAGGATCTGTTGTTGACTCAGTGATAGGTGTTTTCCTCACTCAGAATGTTTCAGATCATCTTTCAAGgtaagctaaatatcatatataggtgttttcctcactcaggatgcttcatcaaaattgccaatgctagaacatgatgatgagcaacccaacagaaaaatttatgcttctttcctttctttgcag