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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATCTAGAATTAAATTTGCAGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaattgtctttttcttttgatgattgttgttgtttatttgtttatttatttatttcctcctttttattttaacccaaaaaaacatgagaatagaatgaaattgagatggctatttacttgcag

Basic information

species Vitis vinifera
transcript Vv13s0074g00190.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71855291|gb|DT004346.1|DT004346
EST:     AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAG                         TTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAATGTGGCA
genomic: AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
EST: gi|110685378|gb|EE062046.1|EE062046
EST:     AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAG                         TTGGGTTTTGAAAACGAAGATNAAGGAAGAAGACTTCTACATAATGTGGCA
genomic: AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
EST: gi|30126088|gb|CB911427.1|CB911427
EST:     AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAG                         TTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
genomic: AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
EST: gi|110722057|gb|EE097952.1|EE097952
EST:     AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAG                         TTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
genomic: AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
EST: gi|161708045|gb|FC056094.1|FC056094
EST:     GGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGC-TTATACAG                         TTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGC
genomic: GGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATT-TACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGC
EST: gi|110703995|gb|EE081418.1|EE081418
EST:     AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAG                         TTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
genomic: AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAATCTAGAATTAAATTTGCAGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaattgtctttttcttttgatgattgttgttgtttatttgtttatttatttatttcctcctttttattttaacccaaaaaaacatgagaatagaatgaaattgagatggctatttacttgcag

- - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT