Sequence
atgc intronic sequence ATGC exonic sequenceATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGGgtaagtagcaagactgtagagcacatattcatcctctttttggggaaatggaaacttcctcatcaagtgtcttcttgtttgttctcaaaaatttaaaata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 3
ATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGGgtaag-tagca--agactgtagagcacatattcatcctctttttggggaaatggaaacttcctcatcaagtgtcttcttgtttgttctcaaaaatttaaaata
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ACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGGgtaagctaacataaaacttcaaggcacatag--aacatgcgctggggtatacataatttgtttgaaaaaatcttatagaacatgtgctgaaggtgttagtcc-
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 3
ATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGGgtaag-tagca--agactgtagagcacatattcatcctctttttggggaaatggaaacttcctcatcaagtgtcttcttgtttgttctcaaaaatttaaaata
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ACATGGCTCTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGGgtaagctaacataaaacttcaaggcacctag--aacatgtgctggggtataaatagtttgtttggaaaaatcttacataacatgtgccgaaggtgttaggcc-
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 3
ATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGGgtaag----tagcaagactgtagagcacatattcatcctctttttggggaaatggaaacttcctcatcaagtgtcttcttgtttgttctcaaaaatttaaaata
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ATATGGCACTTGAATCTTGTGAGGGTGGCGAGCTTTTCGACCAAATAACCAGAgtaagatgatcgctgaatcttgggagattgattcattcaatgttgtcggaatttgacataacatcatggttcctttttttgtgcag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717324|gb|FC068850.1|FC068850EST: TGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGG AAAGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTA
genomic: TGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGGgtaagtagca ... gtgagtgcagAAAGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGGgtaagtagcaagactgtagagcacatattcatcctctttttggggaaatggaaacttcctcatcaagtgtcttcttgtttgttctcaaaaatttaaaata
- - - - - - - - - - - GGTGGA
- - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaatt