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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAGgtgaggaaaatattgaagattttggaattgaattcttctcatccaaaagaaatgaaaatttgttgattcagtttctaacctgggattggttaatgggaattgatcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03510.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 5'ss of exon 4
GAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAGgtgaggaaaatattgaagattttggaattgaattcttctcatccaaaagaaatgaaaatttgttgattcagtttctaacctgggattggttaatgggaattgatcag---
| ||| || ||  |||| ||||||||||||||||||||||| ||||||||| | ||  ||||||| ||||||||||   || |||  |    |  ||  ||    ||| |  |  |    |      || || ||| | | | | |     || |      |  |   |||  | ||    
GGATCATCTTCATTGAAGGACATACCAGTTGTGATCATGTCTTCTGAGAATGTGCCTGCAAGGATCAACAGgtgagctgaaaattcta----tctgagctgtccccttat--tttagcttatcctggaaattattgctgctggtcca----tgaggcatactcctacaaatctaccaaggt

upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G129954_T01 (Zea mays), 5'ss of exon 4
GAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAGgtgaggaaaatattgaagattttggaattgaattcttctcatccaaaagaaatgaaaatttgttgattcagtttctaacctgggattggttaatgggaattgatcag
|| || || ||||| | ||| || || || |||||||||||||||||||| || || |||||||| || ||||||| |      |     | |   | |||   |||| |    | ||| ||  |    |  |   |   | | |  |       |||||  ||    ||||   |  
GAGTCGTCGTCTCTCAGAGATATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtcagctagcactctactatttg---tcttgtggatctaaacaacagtttttaagggaaacaaatcttaagttaaaaattggggaa---aaattacact-

upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G21650.1 (Glycine max), 5'ss of exon 4
GAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAGgtgaggaaaa-------------tattgaagattt--tggaattgaattcttctca----tccaaaa---gaaatgaaaatttgtt---gattcagtttctaacctgg--gattggttaatgggaattg-atcag-----------------------------------------------
||||||  |||||| |||||||||||||| ||||| |||||||| |||||| ||||  |||||||||||||||||||||||             |||     ||    |  |||  ||   || | |     ||||||    ||||||  |||| |    ||| ||     ||   | |   |||    |||  | |||| |||                                                 
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAGgtgaggaaaattacctccaattatatcaggaatccaatacaataaaaaaattattagagacccaaaataaaaaatgatcatttatgagggatccaaaacatattttagccaattcaaaaatttggattgcatccatgactgaacttcaaatctaacaagacattcatttttgtttgtaccag

upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G37770.1 (Glycine max), 5'ss of exon 4
GAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAGgtgaggaaaatattgaagattttggaattgaattcttctcatccaaaagaaatgaaaatttgttgattcagtttctaacctgggattggttaatgggaattgatcag--
||||||  |||||| ||| |||||||||||||||| |||||||| |||||| | || |||||||| |||||||||||||  |  | ||    |   |||  ||| |    || |  ||  |  |  ||||||    |||||  |  ||    || ||    |      | ||||  |   
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgaggaa--tcctaaa---ctcccaatccaatac----caacttaattattttgaaattttcaaattcacatattatgggggcatcacatggctaaatttgactaaca

upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G29250.1 (Glycine max), 5'ss of exon 4
GAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAGgtgaggaaaat--attgaagattttggaattgaattcttctcatccaaaagaaatgaaaatttgttgattcagtttc-taacctgggattggttaatgggaattgatcag-----------------------------------
||||||  |||||| |||||||||||||| ||||| |||||||| |||||| ||||  ||||||| ||||||||||| ||||  | |  |  |     ||||  | |  | |||   | |  ||||  |  | | ||  ||||  |||  ||  |  |||||  | |   || |  |   |                                   
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAGgtgagggaaattgaatccaattaccaaaattttaattatgtca---agacaaaatatatttgtttttcttcaaattcacaaattctgattgcatcacatgactgaacttgaaatctaacaagaccttcatttttgtttgtatcag

upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
GAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAGgtgaggaaaatattgaagattttggaattgaattcttctcatccaaaagaaatgaaaatttgttgattcagtttctaacctgggattggttaatgggaattgatcag
||||||  |||||| ||| |||||||||||||||| |||||||| |||||| | || |||||||| ||||||||||| ||   |||||   | |       |        || || ||  |  |   || ||    |||||  |  ||    || ||    |      | || |    
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaa---ttgaatcctataaccccaatccaacaccaacctaattattttgtaaatttcaaattcacatattaggagggcatcacatggctaaatttca----