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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtgagaacattattgaagattgtccactttttcctttttgatacaattgaattcttcacatttaaaacaaatcaatggtttgttgattcactttctaatctgagaatggtcaatgggtattgatcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03460.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 5'ss of exon 4
GAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtgagaacattattgaagattgtccactttttcctttttgatacaattgaattcttcacatttaaaacaaatcaatggtttgttgattcactttctaatctgagaatggtcaatgggtattgatcag
|  ||  | ||  | || | ||| ||||||||||||||||| ||||||||| | ||| | ||||| ||||||||||   |  |||  |  |   |       |  |||| | |     || |   |      ||    |   || |||        || | | | | |||||   || |||                 
GGATCATCTTCATTGAAGGACATACCAGTTGTGATCATGTCTTCTGAGAATGTGCCTGCAAGGATCAACAGgtgagctgaaaattctatctgagctgtccccttattttagcttatcctggaaatta-----ttgctgctggtccatgaggc----atactcctacaaatctaccaa-ggt-----------------

upper sequence: Vv13s0067g03460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G129954_T01 (Zea mays), 5'ss of exon 4
GAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtgagaacattattgaagattgtccactttttcctttttgatacaattgaattcttcacatttaaaacaaatcaatggtttgttgattcactttctaatctgagaatggtcaatgggtattgatcag
|||||  | ||||| | ||  ||||| || |||||||||||||||||||| || ||||| ||||| || ||||||| |  | |   |  | |  | ||| |||   || ||   | |   ||   ||   |    |||||||||             || | ||   |||  | |||   | |               
GAGTCGTCGTCTCTCAGAGATATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagca-gtcagctagcact--ctactatttgtcttgtggatctaaacaacagtttttaagggaaacaaatc-------------ttaagttaaaaattggggaaaaattacact-----------

upper sequence: Vv13s0067g03460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G21650.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtgag-aacattattgaagattgtccactttttcctttttgatacaattgaattcttc-acatttaaaacaaatcaatggtttgttgattcactttctaatctgagaatggtcaat----gggtattgatcag----------------------------------------------------
|| |||| ||||||||||| ||| ||||| ||||| |||||||| |||||| ||||  | |||||||||||||||| || ||||      ||| |        |||  |   ||| ||   |||| ||  | |   |||| |||  |||| |   ||        | | || |  |   | | ||||       | | |||                                                       
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAGgtgaggaaaattacctccaattatatcaggaatccaatacaataaaa--aaattattagagacccaaaataaaa-aatgatcatttatgagggatccaaaacatattttagccaattcaaaaatttggattgcatccatgactgaacttcaaatctaacaagacattcatttttgtttgtaccag

upper sequence: Vv13s0067g03460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtgagaacattattgaagattgtccactttttcctttttgatacaattgaattcttcacatttaaaacaaatcaatggtttgttgattcactttctaatctgagaatggtcaatgggtattgatcag
|| |||| ||||||||||  ||| ||||||||||| |||||||| |||||| | || || ||||| ||||||||||   |||   |||   | |   |    |||      |  | | | | ||  | |  || |||   |   | | |   |      ||      ||| | |                        
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaatt---gaatcctataaccccaatccaacaccaacctaattattttgtaaatttcaaattcacatattaggagggcatcacatggctaaatttca------------------------

upper sequence: Vv13s0067g03460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G29250.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtgagaacattattgaa---gattgtccactttttccttttt----gatacaattgaattcttcacatttaaa---acaaatc---aatggtttgt-tgattcactttctaatctgagaatgg--tcaatgg-gtattgatcag
|| |||| ||||||||||| ||| ||||| ||||| |||||||| |||||| ||||  | ||||| ||||||||||   |  ||||||    |||  | |  ||||  || |     || | |||  | || ||    || |||   ||||||    | ||  |    ||| | |  ||  ||||| | ||     ||| |   || |  |||||
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAGgtgagggaa--attgaatccaattaccaaaattttaattatgtcaagacaaaatatatttgtttttcttcaaattcacaaattctgattgcatcacatgactgaacttgaaatctaacaagaccttcatttttgtttgtatcag

upper sequence: Vv13s0067g03460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G37770.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtgagaacattattgaagattgtcca-ctttttcctttttgatacaattgaattcttcacatttaaaacaaatcaatggtttgttgattcactttctaatctgagaatggtcaatgggtattgatcag
|| |||| ||||||||||  ||| ||||||||||| |||||||| |||||| | || || ||||| |||||||||| |    ||   | | |  | | |   | ||   || ||    ||||| | |||| ||| |   || || |  ||    |    |  ||    ||| |||  |                     
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagga----atcctaaactcccaatccaataccaacttaattattttgaaattttcaaattca---catattatgggggcatcacatggcta---aatttgactaaca------------------