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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactattgaatatcttggaattgaattcttctcatccaaaagaaatgaaattttgttgattcaatttctaatatgagaatgtttgatgggtatttatcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03430.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 5'ss of exon 4
GAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactattgaatatcttggaattgaattcttctcatccaaaagaaatgaaattttgttgattcaatttctaatatgagaatgtttgatgggtatttatcag---
|  ||  | ||  |||| ||||||||||||||||||||||| ||||||||  | ||| ||||||| ||||||||||   |  |||   |||||  ||  ||    ||| |  |  |    |      |  || ||| | |   | |    |||||      |  |    || || ||    
GGATCATCTTCATTGAAGGACATACCAGTTGTGATCATGTCTTCTGAGAATGTGCCTGCAAGGATCAACAGgtgagctgaaaattc--tatct--gagctgtccccttat--tttagcttatcctggaaattattgctgctggtcc----atgaggcatactcctacaaatctaccaaggt

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g04720.1 (Oryza sativa), 5'ss of exon 4
GAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactattgaa--tatcttggaattgaattcttctcatccaaaagaaatgaaattttgttgattcaatttctaatatgagaatgtttgatgggtatttatcag
|| ||  | | | | |  ||||| ||||||||||||||||| || || ||||| ||||||||||| || ||||||| |  ||  || |  || | |   |||     | |||  | ||| | ||   |  || || |  ||  ||    || |||  || ||  |||| | |  |     
GAATCGTCTTATTTAAGGGACATCCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAAGGATCAATAGgtgagcactcttatggatctaccatattatttcgaccatctattacaatacaagc-atcttatgatatttggatg---aacatgccaaagtcagatgtgcagat-----

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os12g04500.1 (Oryza sativa), 5'ss of exon 4
GAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactattgaa--tatcttggaattgaattcttctcatccaaaagaaatgaaattttgttgattcaatttctaatatgagaatgtttgatgggtatttatcag
|| ||  | | | | |  ||||| ||||||||||||||||| || || ||||| ||||||||||| || ||||||  |  ||  || |  || | |   |||     | |||  | ||| | ||   |  || || |  ||  ||    || |||  || ||  |||| | |  |     
GAATCGTCTTATTTAAGGGACATCCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAAGGATCAATAGgtgaacactcttatggatctaccatattatttcgaccatctattacaatacaagc-atcttatgatatttggatg---aacatgccaaagtcagatgtgcagat-----

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G129954_T01 (Zea mays), 5'ss of exon 4
GAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactattgaatatcttggaattgaattcttctcatccaaaagaaatgaaattttgttgattcaatttctaatatgagaatgtttgatgggtatttatcag
|||||  | ||||| | ||| || || || ||||||||||||||||||||||| ||||||||||| || ||||||| |  |   |     |||   | |||  |  |    ||| |||   ||     |||    ||  ||| |  |||  | | |||   ||  |   | |||    
GAGTCGTCGTCTCTCAGAGATATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtcagctagcactctactatttg--tcttgtggatctaaac--aacagtttttaagggaaacaaatcttaagttaaaaat---tggggaaaaattacact

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G21650.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactattgaatatcttggaattgaattcttctcatccaaaagaaatgaaattttgttgattcaatttctaatatgagaatgtttgatgggtatttatcag---------------------------------------------------------------------------------
|| |||| |||||| |||||||||||||| ||||| |||||||| |||||  ||||  |||||||||||||||||| |||  |||   |    |   ||        ||  || ||| | |||  || | ||   ||  |||  |  || ||||  || | ||| || |    | ||                                                                                  
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAGgtgaggaaa--attacctccaattatatcaggaa--tccaatacaataaaaa--aattattagagacccaaaataaaaaatgatcatttatgagggatccaaaacatattttagccaattcaaaaatttggattgcatccatgactgaacttcaaatctaacaagacattcatttttgtttgtaccag

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactattgaatatcttggaattgaattcttctcatccaaaagaaatgaaattttgttgattcaatttctaatatgagaatgtttgatgggtatttatcag
|| |||| |||||| ||| |||||||||||||||| |||||||| |||||  | || |||||||| ||||||||||  ||   ||||||    |       |        || || ||  |  |   |  ||    |||||     || || |||    |   |||| ||  | ||| 
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaa---ttgaatcctataaccccaatccaacaccaacctaattattttgtaaatttcaaattca---catattaggagggcatcacatggctaaatttca-

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G29250.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaact---attgaatatcttggaattgaattcttctcatccaaaagaaatgaaattttgtt--gattca--atttctaatatga--gaatgtttga--tgggtatttatcag------------------------
|| |||| |||||| |||||||||||||| ||||| |||||||| |||||  ||||  ||||||| ||||||||||  || |   ||  |||  |    | || |||| |    |  ||||| | ||    |||| ||   |||||  | |||| ||   |    |||  |||  | |  || || ||                         
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAGgtgagggaaattgaatccaattaccaaaattttaattatgtcaagacaaaatatatttgtttttcttcaaattcacaaattctgattgcatcacatgactgaacttgaaatctaacaagaccttcatttttgtttgtatcag

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G37770.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactattgaatatcttggaattgaattcttctcatccaaaagaaatgaaattttgttgattcaatttctaatatgagaatgtttgatgggtatttatcag-----
|| |||| |||||| ||| |||||||||||||||| |||||||| |||||  | || |||||||| |||||||||| || |   | ||   |    |||  ||| |    || |  ||  |  |  || |||    |||||     || |||| |    |   |||| ||  | | |      
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgaggaatcc--taaactccc---aatccaatac----caacttaattattttgaaattttcaaattca---catattatgggggcatcacatggctaaatttgactaaca