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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATGCAGTCTCCTGAAATATTAACCCGTCCAGAAAATCCCAACCCAAAGTGGCCTGTTCCCAAAGACCTTATTGAGTTACAGCCTTCATATAAGCAGgtaaactaagtactataaatatgttgaatcatatctattttcttcaaattttcactcctcaaacaatgttctatgatttgatatattgtggtttttatacag

Basic information

species Vitis vinifera
transcript Vv13s0067g03330.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g72310.1 (Oryza sativa), 5'ss of exon 3
TGAGATGCAGTCTCCTGAAATATTAACCCGTCCAGAAAATCCCAACCCAAAGTGGCCTGTTCCCAAAGACCTTATTGAGTTACAGCCTTCATATAAGCAGgtaaactaagtactataaatatgttgaatcatatctattttcttcaaattttcactcctcaaacaatgttctatgatttgatatattgtggtttttatacag
|||||||||| |||||||||      | || ||||||||||| |||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||||| |    | |  | |   ||||||     |  ||    |||||    || |  |   | |||  ||  ||| | | |  | | |||     | ||||  ||
TGAGATGCAGACTCCTGAAACTCGTGCACGGCCAGAAAATCCAAACCCAAAATGGCCAGTGCCCAAAGACCTAATTGAGTTGCAGCCTTCATATAAGCAGgtcagt--acttgtgtgc-tatgttatgctacttcatcattctt----ttgttgcagttgaaaagattgtctctaaat--acaaatttcccatcttatgtag

upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G379804_T01 (Zea mays), 5'ss of exon 2
TGAGATGCAGTCTCCTGAAATATTAACCCGTCCAGAAAATCCCAACCCAAAGTGGCCTGTTCCCAAAGACCTTATTGAGTTACAGCCTTCATATAAGCAGgtaaactaagtactataaatatgttgaatcatatctattttcttcaaattttcactcctcaaacaatgttctatgatttgatatattgtggtttttatacag
|||||||||||||||||| |      |  | ||||||||||| |||||||||||||| || || || || || ||||| || || ||||||||||||||||||      || ||     | || |  ||| | || |||||  ||   |||     |     | |||     ||  | ||| || |||   |||   ||   
TGAGATGCAGTCTCCTGAGACTCGTGCAAGGCCAGAAAATCCAAACCCAAAGTGGCCAGTGCCTAAGGATCTAATTGAATTGCAACCTTCATATAAGCAGgtac-----gtgct-----tgtgct--atcttgtccatttttatcccctttgtgtgctattgaaaataa---attttctgaaattttgcaatttccttag--

upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G21600.1 (Glycine max), 5'ss of exon 3
TGAGATGCAGTCTCCTGAAATATTAACCCGTCCAGAAAATCCCAACCCAAAGTGGCCTGTTCCCAAAGACCTTATTGAGTTACAGCCTTCATATAAGCAGgtaaactaagtactataaatatgttgaatcatatctattttcttcaaattttcactcctcaaacaatgttctatgatttgatatattgtggtttttatacag
                     |    |||| || |||||||| || || ||||||||||| |||||||| ||||||||| |||| |||||||||||||||| |   | | |   | || |  ||| |     |||| ||||   |   || |   |       |||||  |||  ||   || |    |  ||  ||  |||
---------------------AGAGGCCCGACCTGAAAATCCTAAACCGAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGCATGGTTAATGG-AGAACTCAgttaacattcatctttttttccctctttctggttt-----gcaatg--ctaacatgcaatgttgattatttaatacccag

upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G28970.1 (Glycine max), 5'ss of exon 4
----------------------------------------------TGAGATGCA---GTCTCCTGAAATATTAACCCGTCCAGAAAATCCCAACCCAAAGTGGCCTGTTCCCAAAGACCTTATTGAGTTACAGCCTTCATATAAGCAGgtaaactaagtactataaatatgttgaatcatatctattttcttcaaattttcactcctcaaacaatgttctatgatttgatatattgtggtttttatacag
                                              | |  || |   |   |     | |    |||| || |||||||| || || ||||||||||| |||||||| ||||||||| |||| |||||||||||||||| |   | | |                                                                                           
ATTGTGTTTCTATAGACAATACAAAGTGTACTTATCCTGGCTGCAGTAAATTGTATGAGATGCAGAGTAGAGAGGCCCGACCTGAAAATCCTAAACCGAAgtggcctgtacccaaagatcttattgagctacaaccttcatataagcaggcatggttaatggag---------------------------------------------------------------------------------------

upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G28970.2 (Glycine max), 5'ss of exon 3
---------------------------------------TGAGATGCA---GTCTCCTGAAATATTAACCCGTCCAGAAAATCCCAACCCAAAGTGGCCTGTTCCCAAAGACCTTATTGAGTTACAGCCTTCATATAAGCAGgtaaactaagtactataaatatgttgaatcatatctattttcttcaaattttcactcctcaaacaatgttctatgatttgatatattgtggtttttatacag-----
                                       | |  || |   |   |     | |    |||| || |||||||| || || ||||||||||| |||||||| ||||||||| |||| |||||||||||||||| |   | |     ||  | |  |    |   ||  |  ||| ||   ||||| ||| |       | | | ||| |   ||  ||||| | || | ||        
TTCTATAGACAATACAAAGTGTACTTATCCTGGCTGCAGTAAATTGTATGAGATGCAGAGTAGAGAGGCCCGACCTGAAAATCCTAAACCGAAGTGGCCTgtacccaaagatcttattgagctacaaccttcatataagcaggcatggtta-----atggagaactcagctggcattaacattcatctttttttccctctttc--tggtttgcaatggtaacatgcattgttgattgtttaatacccag

upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G54460.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAGATGCAGTCTCCTGAAATATTAACCCGTCCAGAAAATCCCAACCCAAAGTGGCCTGTTCCCAAAGACCTTATTGAGTTACAGCCTTCATATAAGCAGgtaaac-taagtactataaatatgttgaatca-tatctattttcttcaaattttcactcctcaaacaatgttctatgatttgatatattgtggtttttatacag
|||||||||  |||||||||  ||  | || ||||||||||| || |||||||||||||| || || || ||||||||||||||||||||||||||||||||| |  |  |||  |   || |  | | | |    ||   ||| |  |||  |     |  |  || |  |  || |||                        
TGAGATGCAAACTCCTGAAACTTTGGCGCGACCAGAAAATCCAAATCCAAAGTGGCCTGTGCCAAAGGATCTTATTGAGTTACAGCCTTCATATAAGCAGgtagatatgcgtataaaccatcttataagttaacgacttggttcctggaatggtatactcaaatgcattacttcattattcag---------------------