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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaaattaattcttctgaatattccctactattacatgttcaacttttggtcctttgccatttcagtgtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccag

Basic information

species Vitis vinifera
transcript Vv13s0067g02970.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g07310.3 (Oryza sativa), 5'ss of exon 3
ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaa-attaattcttctgaatattccctacta-ttacatgttcaacttttggtcctttgccatttcagtgtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccag
 ||||||||||   |||| ||||| |||||  | || ||||| || || ||||| || || ||  |||| || ||||||||||||||||||||||| ||||||   |||  || | ||   |  |    |  | |||   |   | | | ||||  | |   | || | |||   || |     ||||  |    ||  |                       
TTTTGATGCAAGGACTGTCATGGGATTTGGTGTGCTCAATGGCATTTCAATTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattgtttttgctctgtcctgatcaaaacttaacaggctatcatctggtagtgttgtactt-aatgtccttctaattgttggtacccctgctgcta----------------------

upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 3
ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaaattaattcttctgaatattccctactattacatgttcaacttttggtcctttgccatttcagtgtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccag
 || |||||||   | || ||||| || ||  | || ||||| || || |||||||| || ||  ||||  | |||||||||||||||||||||||||||||| |    || | | |   |   | ||| | |||  |||     |           |    ||  ||| |         | || ||||| |      |  | ||    ||          
TTTCGATGCAAGGACCGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacac---atcccttt---ttccctctaattttatttgtattcatccaaacataaggtttattgggtgatct----agcactgatttcttattcggcgcca-ataacatg----------

upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G116053_T01 (Zea mays), 5'ss of exon 3
ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaaattaattcttctgaatattccctacta--ttacatgttcaacttttggtcctttgccatttcagtgtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccag
 || |||||||   |||| ||||| || ||  | || ||||| || || |||||||| || ||  |||| || ||||||||||||||||||||||||||||||    |   | |||||  | |   |  | |   |  | ||| |   || |||    || ||      | ||  ||  |  | |  |  |   ||  |||||||                  
TTTCGATGCAAGGACTGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTTAACTTGAGTCTGGGTTTCAATTCTGTTGGTTTCTATCAGgtatgcatcccttttctgtttgtattcagccaaacttaaggttta---ttgggtgacctggcaccgacttcttattc--ggcactcatagcatgac--atgttatca----------------

upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G14970.2 (Glycine max), 5'ss of exon 3
ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaaattaattcttctgaatattccctactattacatgttcaacttttggtcctttgccatttcagtgtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccag
 |||||    |||||||| || || ||||| ||| ||||||| ||||| ||||||||  | ||| ||||||| ||||||||||||||||| |||||||| |||   |||    || ||  | |    | ||   || ||||||   |||| |  || |     || |    |||| |     |   || | |                             
TTTTGAGCAGAAAGCTGTAATTGGATTTGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgttta----ttatggttctgtttttct--cacgtgttca---tttgattatt-gttgactctgaacatctctatgatattccttttcag----------------------------

upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G39920.4 (Glycine max), 5'ss of exon 3
ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaaattaattcttctgaatattccctactattacatgttcaacttttggtcctttgccatttcagtgtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccag
 |||||    |||||||| ||||| || || ||| ||||||| ||||| ||||||||  | ||| ||||||| || |||||||||||||| |||||||| |||    |  || || ||  | |    |  | | || ||||||   |||| |  || |     || | |  |||| |     |   || | |                             
TTTTGAGCAGAAAGCTGTAATGGGATTCGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAAgta----tgtttgttatggttctgtttt--tgtcacgtgttca---tttgattatt-gttgactctgagcatctctatgatattccttttcag----------------------------

upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G14980.1 (Glycine max), 5'ss of exon 3
ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaaattaattcttctgaatattccctactattacatgttcaacttttggtcctttgccatttcagt-gtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccag
 |||||    |||||||| ||||| ||||| ||||| |||||||| || ||||| ||  | ||| ||||||| || |||||||||||||| || |||||||| |  ||  |  |||| |    |   || | || |||||  ||  ||| |   | ||   ||| ||| |||| |||||       ||| |||||  | | | |||| | | || ||||   
TTTTGAGCAGAAAGCTGTGATGGGATTTGGAATTCTTAATGGAATATCAATTGGTCTTTTAAATTTGAGCCTAGGCTTCAATTCTGTTGGCTTTTATCAGgtgatttttttctttctcagc--tatatatt-ttgcatgt--aatattttgatttgtgttgtttaagttgtttttcaagtt-----tttttgaac--aagctctattatatttgcattcag-

upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S311_78V6.1 (Physcomitrella patens), 5'ss of exon 2
ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgta--aaatt-----aattcttctgaatattc--cctac-tattacatgttca-----------ac-ttttggtcctttgccatttcagtgtttctcaagagagtggtttctgaacttatgttat--attgtttgtgtattccag--------------------------------
 || |||  |    |  || | || |||| | |||| || ||||| || ||||| || || || |||||||| |||||||| ||||||||||| |||||||||  |||||     |  | | | |||   |   | | | | || | || | |           || ||||||    || |||||| |       ||        || ||||     | |   ||  |        | ||   ||                                
CTTCGATTTACGGACGCTTTTCGGGTTTGCCGTTCTGAACGGAATTTCTATTGGCCTTCTAAACCTGAGCCTGGGTTTCAACTCTGTTGGTTTTTATCAGgtactaaattttgtcagctatacagaaagctgagcttgcgtgttgcgtgattatagatcaagagacgttttggcttattaccatttgatcccccttctgttataagggttctagctctgttgcatgaacaagaaccgaatctgagagagtacgagtaaccaaacaattttcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110370848|gb|EC934415.1|EC934415
EST:     TTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTC
genomic: TTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaaattaa ... tgtattccagATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTC