1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TAGAGAGTCTCCCAGAACGTGCTTTTGAAGATGTTGCAGATTGGGAGAGGAACTTGATTCAAGACCGGGTCCGTTCCCTGCGTGGAACTTGAGGATACTGgtaagtagttttgtttgttgtcttttaactcatccaagttgaaaccaatccaagatggagctggaattctggtgctgagtggttgtcaacacagcttcta...
species | Vitis vinifera |
transcript | Vv13s0067g02510.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTGATTTCA-GACCGGGGTCCGTTCCCTGCGTGGAACTTGAGGAAACTG GEST: gi|110727344|gb|EE103999.1|EE103999
genomic: CTTGATT-CAAGACCGGG-TCCGTTCCCTGCGTGGAACTTGAGGATACTGgtaagtagtt ... attctggcag-
EST: CTTGATTTCA-GACCGGGGTCCGTTCCCTGCGTGGAACTTGAGGAAACTG GEST: gi|33405280|gb|CF210907.1|CF210907
genomic: CTTGATT-CAAGACCGGG-TCCGTTCCCTGCGTGGAACTTGAGGATACTGgtaagtagtt ... attctggcag-
EST: AACTTGATTCAAGACCGGGTCCGTTCCCTGCGTGGAACTTGAGGATACTG TTGTCATTTCCACACAAATTTCCAGAGTGGTTGAATTGGAGACTCAAAAGC
genomic: AACTTGATTCAAGACCGGGTCCGTTCCCTGCGTGGAACTTGAGGATACTGgtaagtagtt ... attctggcagTTGTCATTTCCACACAAATTTCCAGAGTGGTTGAATTGGAGACTCAAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAGAGTCTCCCAGAACGTGCTTTTGAAGATGTTGCAGATTGGGAGAGGAACTTGATTCAAGACCGGGTCCGTTCCCTGCGTGGAACTTGAGGATACTGgtaagtagttttgtttgttgtcttttaactcatccaagttgaaaccaatccaagatggagctggaattctggtgctgagtggttgtcaacacagcttcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacca