1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGAAACAAAATCTTTTAATGCTGCAACCAATTCTCTGCCATCCAACTCTGCTGGTCACAGCAAGAAATCCTCTGCTAGGAAAAAATCCCTCAGATCCAGgtaataacattaaggagcaatgtgttttttatgaaatgcaacagtcaaaaatttgcttctatggaatgcaacagtggaaattttgctttttatgaaatgc...
species | Vitis vinifera |
transcript | Vv13s0067g02180.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTGGTCACAGCAAGAAATCCTCTGCTAGGAAAAAATCCCTCAGATCCAG ACTCTGAGGCTGGAAAATGGAGTTGGTTGGAAGATGCAGCTTCATAGGTCTEST: gi|71863852|gb|DT012907.1|DT012907
genomic: GCTGGTCACAGCAAGAAATCCTCTGCTAGGAAAAAATCCCTCAGATCCAGgtaataacat ... tattttgcagACTCTGAGGCTGGAAAATGGAGTTGGTTGGAAGTTGCAGCTTCATAGGTCT
EST: GCTGGTCACAGCAAGAAATCCTCTGCTAGGAAAAAATCCCTCAGATCCAG ACTCTGAGGCTGGAAAATGGAGTTGGTTGGAAGTTGCAGCTTCATAGGTCTEST: gi|71864134|gb|DT013189.1|DT013189
genomic: GCTGGTCACAGCAAGAAATCCTCTGCTAGGAAAAAATCCCTCAGATCCAGgtaataacat ... tattttgcagACTCTGAGGCTGGAAAATGGAGTTGGTTGGAAGTTGCAGCTTCATAGGTCT
EST: GCTGGTCACAGCAAGAAATCCTCTGCTAGGAAAAAATCCCTCAGATCCAG ACTCTGAGGCTGGAAAATGGAGTTGGTTGGAAGTTGCAGCTTCATAGGTCT
genomic: GCTGGTCACAGCAAGAAATCCTCTGCTAGGAAAAAATCCCTCAGATCCAGgtaataacat ... tattttgcagACTCTGAGGCTGGAAAATGGAGTTGGTTGGAAGTTGCAGCTTCATAGGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAAACAAAATCTTTTAATGCTGCAACCAATTCTCTGCCATCCAACTCTGCTGGTCACAGCAAGAAATCCTCTGCTAGGAAAAAATCCCTCAGATCCAGgtaataacattaaggagcaatgtgttttttatgaaatgcaacagtcaaaaatttgcttctatggaatgcaacagtggaaattttgctttttatgaaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggaaa