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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATGTTGATCTGGGAACAGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagccttatatttcaccatgctggactgatttgctttacaattaagcatatggcaatggtaaccaattgctctttatatatatatatttgtatgttgcag

Basic information

species Vitis vinifera
transcript Vv13s0064g00850.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83276983|gb|DV940991.1|DV940991
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|77588180|gb|DV223301.1|DV223301
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|71872071|gb|DT021126.1|DT021126
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|110376398|gb|EC941462.1|EC941462
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|37187884|gb|CF607235.1|CF607235
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|71867496|gb|DT016551.1|DT016551
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|71873230|gb|DT022285.1|DT022285
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|110733216|gb|EE109213.1|EE109213
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGATCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|87585575|gb|DY474236.1|DY474236
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|110366148|gb|EC929857.1|EC929857
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|77579663|gb|DV218684.1|DV218684
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|77577312|gb|DV217370.1|DV217370
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|110378405|gb|EC943536.1|EC943536
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|71866692|gb|DT015747.1|DT015747
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|30137151|gb|CB922489.1|CB922489
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT