1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAGgtgtgtgcctaattaattctgttattattttacattttatatagatcctttcttttacattttttttttttgaaaaaaaaaataaaattccctcttggtt...
species | Vitis vinifera |
transcript | Vv13s0064g00580.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAG AGAAAAAAGAAATGACGGGATTGEST: gi|110385321|gb|EC949833.1|EC949833
genomic: TGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAGgtgtgtgcct ... tttggaacagAGAAAAAAGAAATGACAGGATTG
EST: TGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAG AGAAAAAAGAAATGACAGGATTGGCTATTGGTGTCTCCAACATGAAGTCTGEST: gi|30304226|gb|CB981020.1|CB981020
genomic: TGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAGgtgtgtgcct ... tttggaacagAGAAAAAAGAAATGACAGGATTGGCTATTGGTGTCTCCAACATGAAGTCTG
EST: TGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAG AGAAAAAAGAAATGACGGGATTGGCTATTGGTGTCTCCAACATGAAGTCTGEST: gi|87584069|gb|DY473366.1|DY473366
genomic: TGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAGgtgtgtgcct ... tttggaacagAGAAAAAAGAAATGACAGGATTGGCTATTGGTGTCTCCAACATGAAGTCTG
EST: TGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAG AGAAAAAAGAAATGACAGGATTGGCTATTGGTGTCTCCAACATGAAGTCTG
genomic: TGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAGgtgtgtgcct ... tttggaacagAGAAAAAAGAAATGACAGGATTGGCTATTGGTGTCTCCAACATGAAGTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAGgtgtgtgcctaattaattctgttattattttacattttatatagatcctttcttttacattttttttttttgaaaaaaaaaataaaattccctcttggtt
- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc