Sequence
atgc intronic sequence ATGC exonic sequenceCTTCTATGGTGAATAAAATATCATGCGACAGCAATCAGAGCAACTCGTTGGTGCAGCAACTCACTTCAGACACTGTCATTGAGgtagtggtggcaaattgatttgtattttaattgtggcatatcatttggtaaatggttgtaaatatttcagattgttttgctaatgttacctggaagtcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g05380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G18400.1 (Glycine max), 5'ss of exon 4
CTTCTATGGTGAATAAAATATCATGCGACAGCAATCAGAGCAACTCGTTGGTGCAGCAACTCACTTCAGACACTGTCATTGAGgtagtggtggcaaattgatttgtattttaattgtggcatatcatttggtaaatggttgtaaatatttcagattgttttgctaatgttacctggaagtcag
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CTCTAATGGTCAACCGGATATCATGTGATAGCAACGCTAACAAGTCATTGATGCAGCAACTCACATCAGACACTATAATTGAGgtagt-------actctatttctatttcatttt---cttatgattctatatttgtgggattccagttaaaggtgccattggattgccatgtggaatccag
upper sequence: Vv13s0019g05380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G24290.1 (Glycine max), 5'ss of exon 4
CTTCTATGGTGAATAAAATATCATGCGACAGCAATCAGAGCAACTCGTTGGTGCAGCAACTCACTTCAGACACTGTCATTGAGgtagtggtggcaaattgatttgtattttaattgtggcatatcatttggtaaatggttgtaaatatttcagattgttttgctaatgttacctggaagtcag
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CTCTAATGGTTAACCGGATATCATGTGATAGCAATGCTAACAGGTCATTGATGCAGCAACTCACATCAGACACTATAATTGAGgtagt-------actctatttctatttcatttt---cttgtgattctatatttgtgggattccagttaaaggtgtcattggattgctatgtggaatccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351022786|gb|FQ428695.1|FQ428695EST: ATCAGAGCAACTCGTTGGTGCAGCAACTCACTTCAGACACTGTCATTGAG GTTATTATTGATATTCCTTTTCCATTTCGAGCGATTCCTGTCGAAGCAATA
genomic: ATCAGAGCAACTCGTTGGTGCAGCAACTCACTTCAGACACTGTCATTGAGgtagtggtgg ... tggaagtcagGTTATTATTGATATTCCTTTTCCATTTCGAGCGATTCCTGTCGAAGCAATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCTATGGTGAATAAAATATCATGCGACAGCAATCAGAGCAACTCGTTGGTGCAGCAACTCACTTCAGACACTGTCATTGAGgtagtggtggcaaattgatttgtattttaattgtggcatatcatttggtaaatggttgtaaatatttcagattgttttgctaatgttacctggaagtcag
- - - - - - - - - - - - - - - - - - AGAGCA