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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGACAGGAGAGGTTTGGAACATTGACAAACACTTACTACAGAGGTGTCCATGGCATTATTCTAGgtatgtgattggatattctaacttctttcttcttcttccacttctttttattgataggctcactatatgtgcaaaccctttttttctccaaattcataga...

Basic information

species Vitis vinifera
transcript Vv13s0019g05280.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g05280.1 (Oryza sativa), 5'ss of exon 3
CTGGACAGGAGAGGTTTGGAACATTGACAAACACTTACTACAGAGGTGTCCATGGCATTATTCTAGgtatgtgattggatattctaacttctttcttcttcttccacttcttttta----ttgataggctcactatatgtgcaaaccctttttttctccaaattcataga-
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CTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGgta----attctat-tcccaacttatgttcaggaccatcaatatttctaagcatttatcatgcctacagtacatttttataccaatctcactgtcacttagggca