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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCCGATGGTGATAACTTACAGCAAATGGCTTTTGGTTCTTTTGAAATGATGGGAAGTGAAAACCCTCTGTCTGACCTTGCACCACTTGATCAAGAGgtaatactaaactgttgagcttcactgcatggcacctattatcaggtgaaaacgttttaacttttgattgacctattcccatacaacag

Basic information

species Vitis vinifera
transcript Vv13s0019g05240.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30125446|gb|CB910785.1|CB910785
EST:     TGATGGGAAGTGAAAACCCTCTTTCTGACCTTGCACCACTTGATCAAGAG                         CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCA
genomic: TGATGGGAAGTGAAAACCCTCTGTCTGACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA
EST: gi|110724243|gb|EE099899.1|EE099899
EST:     TGATGGGAAGTGAAAACCCTCTTTCTGACCTTGCACCACTTGATCAAGAG                         CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCA
genomic: TGATGGGAAGTGAAAACCCTCTGTCTGACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA
EST: gi|110700080|gb|EE077708.1|EE077708
EST:     TGATGGGAAGTGAAAACCCTCTTTCTGACCTTGCACCACTTGATCAAGAG                         CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCA
genomic: TGATGGGAAGTGAAAACCCTCTGTCTGACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA
EST: gi|110363943|gb|EC927578.1|EC927578
EST:     GACCTTGCACCACTTGATCAAGAG                         CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCA
genomic: GACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA
EST: gi|34550565|gb|CF518783.1|CF518783
EST:     TGATGGGAAGTGAAAACCCTCTTTCTGACCTTGCACCACTTGATCAAGAG                         CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCA
genomic: TGATGGGAAGTGAAAACCCTCTGTCTGACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA
EST: gi|110366982|gb|EC930902.1|EC930902
EST:     TGATGGGAAGTGAAAACCCTCTTTCTGACCTTGCACCACTTGATCAAGAG                         CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCA
genomic: TGATGGGAAGTGAAAACCCTCTGTCTGACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA