Sequence
atgc intronic sequence ATGC exonic sequenceTGCTTACTAGTGAAGGGATGGAAAGGAACAAGCTGGAGTTTTCCCCGTGGAAAAAAGAACAAAGATGAAGAAGACCACACGTGTGCCATTAGAGAAgtaagatgttattgccgttgtgtattttattggactatctcagtatatctggttcttttatttatataactcttcacttgtttaaaacaccatttcccat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g56210.1 (Oryza sativa), 5'ss of exon 4
TGCTTACTAGTGAAGGGATGGAAA---GGAACAAGCTGGAGTTTTCCCCGTGGAAAAAAGAACAAAGATGAAGAAGACCACACGTGTGCCATTAGAGAAgtaagatgtt--attgccgttgtgtattttattg-gactatctcagtatatctggttcttttatttatataactcttcacttgtt-taaaacaccatttcccat
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TGCTTGCTTGTGAAGGGATGGAAGTCTAGCGCCAGCTGGAGTTTTCCTCGTGGAAAGAGGAGTAAAGATGAAGAAGATCATACATGTGCTGTTAGAGAAgtaaacttctgggctgaatcgatgttgttctttgcagttttatcaattaaattagacttataaaggatagaaatttgtataagtcactgaacaatagttt----
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G150209_T01 (Zea mays), 5'ss of exon 4
TGCTTACTAGTGAAGGGATGGAAA---GGAACAAGCTGGAGTTTTCCCCGTGGAAAAAAGAACAAAGATGAAGAAGACCACACGTGTGCCATTAGAGAAgtaagatgttattgccgttgtgtattttattggactatctcagtatatctggttcttttatttatataactcttcacttgtttaaaacaccatttcccat------------
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TGCTTGCTTGTTAAAGGATGGAAGGCTGGGGCCAGCTGGAGCTTTCCTCGTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAAgtaaa---cttctgcc----tgtatcatgttc-atgcttgcagtttattt---tcctttctgagtgcaccctacaatttctttgaagcat-attgtacttgcagcgatgaaa
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G051756_T01 (Zea mays), 5'ss of exon 4
TGCTTACTAGTGAAGGGATGGAAA---GGAACAAGCTGGAGTTTTCCCCGTGGAAAAAAGAACAAAGATGAAGAAGACCACACGTGTGCCATTAGAGAAgtaagatgttattgccgttgtgtattttattggactatctcagtatatctggttcttttatttatataactcttcacttgtttaaaacaccatttcccat------------
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TGCTTGCTTGTTAAAGGATGGAAGGCTGGGGCCAGCTGGAGCTTTCCTCGTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAAgtaaa---cttctgcc----tgtatcatgttcatgcatg-cagtttattt---tcctttttgagtgcaccctacaatttctttgaagcat-attatacttgcagcaatgaaa
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G08170.1 (Glycine max), 5'ss of exon 4
TGCTTACTAGTGAAGGGATGGAAAGGAACAAGCTGGAGTTTTCCCCGTGGAAAAAAGAACAAAGATGAAGAAGACCACACGTGTGCCATTAGAGAAgtaagatgttattgccgttgtgtattttattggactatctcagtatatctggttcttttatttatataactcttcacttgtttaaaacaccatttcccat----
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TGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGAAAAAAGAGCAAAGACGAAGAAGATCATGCATGTGCCATTAGAGAAgtaag----catgcttctttagaattatcactttctcagtaaatgactctttttctatgtgcttttggactgtaggtctaggaaaaatacttatctgtattctg
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G27200.1 (Glycine max), 5'ss of exon 4
TGCTTACTAGTGAAGGGATGGAAAGGAACAAGCTGGAGTTTTCCCCGTGGAAAAAAGAACAAAGATGAAGAAGACCACACGTGTGCCATTAGAGAAgtaagatgttattgccgttgtgtattttattggactatctcagtatatctggttcttttatttatataactcttcacttgtttaaaacaccatttcccat----
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TGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGAAAAAAGAGCAAAGACGAAGAAGATCATGCATGTTCCATTAGAGAAgtaag----catgctcctttagaattatcattttctctgtaaatgactctttttctatgtgcatttggactttaggtctaggaaaaatacttatctgtattctg
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G13570.1 (Arabidopsis thaliana), 5'ss of exon 4
TGCTTACTAGTGAAGGGATGGAAAGGAACAAGCTGGAGTTTTCCCCGTGGAAAAAAGAACAAAGATGAAGAAGACCACACGTGTGCCATTAGAGAAgtaagatgttattgccgttgtgtattttattggactatctcagtatatctggttcttttatttatataactcttcacttgtttaaaacaccatttcccat------
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TGCCTGTTGGTGAAGGGATGGAAAGGATCGAGCTGGAGCTTTCCCCGCGGAAAAAAGAGCAAGGATGAAGAAGACCATGCTTGTGCCATACGTGAGgttag-tatcaattctgttgtttcctgtct----cttttgtgtttcatttattttacacttttgtagcaaaattgatatctccaaca-accgccactcattgatcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110366533|gb|EC930443.1|EC930443EST: GTGGAAAAAAGAACAAAGATGAAGAAGACCACACGTGTGCCATTAGAGAA GTACAGGAGGAAACAGGTTTTGATGTCTCAAAACTTCTTAACCAAGATGAG
genomic: GTGGAAAAAAGAACAAAGATGAAGAAGACCACACGTGTGCCATTAGAGAAgtaagatgtt ... gtggatgcagGTACAGGAGGAAACAGGTTTTGATGTCTCAAAACTTCTTAACCAAGATGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTTACTAGTGAAGGGATGGAAAGGAACAAGCTGGAGTTTTCCCCGTGGAAAAAAGAACAAAGATGAAGAAGACCACACGTGTGCCATTAGAGAAgtaagatgttattgccgttgtgtattttattggactatctcagtatatctggttcttttatttatataactcttcacttgtttaaaacaccatttcccat
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaca