1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATTCTTGAAGTTCATCTTTGTAGTTAACTTTCTAACTTCTGTGTGCGTTTTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattcctggtagcttatgtatcctggaaacaattgctttattttttttaatgcttatactattttgctacaattgtttcctacttttgtgattaa...
species | Vitis vinifera |
transcript | Vv13s0019g04120.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|71861495|gb|DT010550.1|DT010550
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|71860611|gb|DT009666.1|DT009666
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|30255678|gb|CB971810.1|CB971810
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|110689183|gb|EE065183.1|EE065183
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|351025044|gb|FQ433461.1|FQ433461
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|71862645|gb|DT011700.1|DT011700
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|110418019|gb|EC984128.1|EC984128
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|110381307|gb|EC946633.1|EC946633
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|351037220|gb|FQ457053.1|FQ457053
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|71863408|gb|DT012463.1|DT012463
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|22010776|gb|BQ795810.1|BQ795810
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|22010775|gb|BQ795809.1|BQ795809
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|30255752|gb|CB971884.1|CB971884
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|349828743|gb|FQ418478.1|FQ418478
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|110721127|gb|EE097773.1|EE097773
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|71860253|gb|DT009308.1|DT009308
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|351017619|gb|FQ435972.1|FQ435972
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|161714461|gb|FC064448.1|FC064448
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGGEST: gi|110402278|gb|EC959746.1|EC959746
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
EST: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCT TTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
genomic: TTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattc ... tttttggtagTTATATGCCTCTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCCTAGTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCTTGAAGTTCATCTTTGTAGTTAACTTTCTAACTTCTGTGTGCGTTTTCATCACAGCTATCGCCTTGTACTATATAACAAGGCAGGAAAATTACCTgtaagtattcctggtagcttatgtatcctggaaacaattgctttattttttttaatgcttatactattttgctacaattgtttcctacttttgtgattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacaa