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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTACTATGGGATCCATCAGCTCCATATATTTATCTTTGTGCTAGCTCTCTTTCATGTGATCTACTGCGTGGCCACCTTGGCTTTGGGAACATACAAGgtatacatcaatatacacacacaatatcagcatatatagtttgtcaatttctcagtttgtttgtgtctatggttattggatgcttgtttcttggattgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04070.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G07110.1 (Glycine max), 5'ss of exon 5
GTCTTACTATGGGATCCATCAGCTCCATATATTTATCTTTGTGCTAGCTCTCTTTCATGTGATCTACTGCGTGGCCACCTTGGCTTTGGGAACATACAAGgtatacatcaatatacacacac---aatatcagcatatatagtttgtcaatt-----tctcagtttgtttgtgtctatggttattggatgcttgtttcttggattgcag-----------------------------------
 ||    |||||||| || |||||||||||||| ||||||||||||||  | |||||| |  |  | ||| | |  ||  || ||||||||| |   ||||||  | ||| |     | | |    || |   | |  |   |    |||           |  | ||||  |    ||  |   ||||  || ||| |||   |                                       
TTCAGCATATGGGATTCACCAGCTCCATATATTCATCTTTGTGCTAGCCATTTTTCATATCCTGCAATGCATTGTAACACTGACTTTGGGAAGAACTAAGgtactcctcactcagtcctccccctgattttgacttcaaagatgctccaaacaaaggctatatatagtttcagaacttgtgtgcgggatttttctttgttgctctctgtgtgaattaattcattgtttggttcaatggatgcag

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G07100.1 (Glycine max), 5'ss of exon 1
GTCTTACTATGGGATCCATCAGCTCCATATATTTATCTTTGTGCTAGCTCTCTTTCATGTGATCTACTGCGTGGCCACCTTGGCTTTGGGAACATACAAGgtatacatcaatatacacacacaatatcagcatatatagtttgtcaatttctcagtttgtttgtgtctatggttattggatgcttgtttcttggattgcag
       |||||||| || |||||||||||||| |||||| |||||||| | |||||| |  |  | ||| | |  ||  | |||||||||| |   |||  ||| ||     | |     ||     |  |||     ||  | | ||||  |  || |   | |   | ||   |   | ||   ||| | |  |||  
-----CATATGGGATTCACCAGCTCCATATATTCATCTTTATGCTAGCTGTTTTTCATATCCTACAATGCATTGTAACACTAGCTTTGGGAAGAACTAAgtaata-atactctttccttttcacctcaaatatactccattctttattttcggaacttatggctttaatttgtcgatctgt-ctcaattcattgtctgctt

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G26090.1 (Glycine max), 5'ss of exon 5
GTCTTACTATGGGATCCATCAGCTCCATATATTTATCTTTGTGCTAGCTCTCTTTCATGTGATCTACTGCGTGGCCACCTTGGCTTTGGGAACATACAAGgta------tacatcaatatacacacacaatatcagcata--tatagtttgtcaattt-----ctcagtttgtttgtgtctatggttattggatgcttgtttcttggattgcag
 ||    |||||||| || |||||||||||||| |||||| |||||||| | |||||| |  |  | ||| |    ||  | |||||||||| |   || |||        | |   | | |||    |||||   | |   | ||  ||   || ||      | | ||||| ||| || ||  | ||||     ||| |||   |  |||||
TTCAGCATATGGGATTCACCAGCTCCATATATTCATCTTTATGCTAGCTGTTTTTCATATCCTACAATGCATTATAACAATAGCTTTGGGAAGAACTAAAgtaataaaactctttccttttcacctcaaatatactcctgcctttatcttcaaaacttatggctttaatttgtctgtctcaat--tcattgttaatttgcttcaatggatgcag

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G26100.1 (Glycine max), 5'ss of exon 5
GTCTTACTATGGGATCCATCAGCTCCATATATTTATCTTTGTGCTAGCTCTCTTTCATGTGATCTACTGCGTGGCCACCTTGGCTTTGGGAACATACAAGgtatacatcaatatacacacac-------aatatcag---------catatatagtttgtcaatttctcag-------tttgtttgtg--tctatggtt--attggatgcttgtttcttggattgcag
 ||    |||||||| || |||||||||||||| ||||||||||| ||  | |||||| |  |  | ||| | |  ||  |||||||||||| |   |||||||||    || | | | | |        |  ||||          |||||||||||   || || |  |       ||| |||||   ||| ||| |  |||   || ||| |||   |   ||||
TTCAGCATATGGGATTCACCAGCTCCATATATTCATCTTTGTGCTGGCCATTTTTCATATTCTACAATGCATTGTAACACTGGCTTTGGGAAGAACTAAGgtatactctcatgtcctccccccgattttgacttcagagatgctcctatatatagtttcagaacttgtgtgcgggatttttctttgttgctctgtgggtgaattcattgtttggttcaatggacgcag