1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGCCTGGAGAAGGAGATTGCTGAAGTCCAAGAGCTGAAGgtaacatgatatgattactcacttccatttccagcttggtctaatatatgattcttataggtgtgtgattgatcttaacag
species | Vitis vinifera |
transcript | Vv13s0019g03860.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGAATCTGAGCGCCTGGAGAAAGAGATTGCTGAAGTCCAAGAGCTGAAG NNNNNNNTCAGCACCATGACTGCAAATGAATACTTTGAGAAGCATCCTGAGEST: gi|110389923|gb|EC954797.1|EC954797
genomic: AGGAATCTGAGCGCCTGGAGAAGGAGATTGCTGAAGTCCAAGAGCTGAAGgtaacatgat ... atcttaacagAAAAAAATCAGCACCATGACTGCAAATGAATACTTTGAGAAGCATCCTGAG
EST: AGGAATCTGAGCGCCTGGAGAAAGAGATTGCTGAAGTCCAAGAGCTGAAG AAAAAA-TCAGCACCATGACTGCAAATGAATACTTTGAGAAGCATCCTGAGEST: gi|30325219|gb|CD008481.1|CD008481
genomic: AGGAATCTGAGCGCCTGGAGAAGGAGATTGCTGAAGTCCAAGAGCTGAAGgtaacatgat ... atcttaacagAAAAAAATCAGCACCATGACTGCAAATGAATACTTTGAGAAGCATCCTGAG
EST: AGGAATCTGAGCGCCTGGAGAAAGAGATTGCTGAAGTCCAAGAGCTGAAG NNNNNNNTCAGCACCATGACTGCAAATGAATACTTTGAGAAGCATCCTGAGEST: gi|77577878|gb|DV217689.1|DV217689
genomic: AGGAATCTGAGCGCCTGGAGAAGGAGATTGCTGAAGTCCAAGAGCTGAAGgtaacatgat ... atcttaacagAAAAAAATCAGCACCATGACTGCAAATGAATACTTTGAGAAGCATCCTGAG
EST: AGGAATCTGAGCGCCTGGAGAAAGAGATTGCTGAAGTCCAAGAGCTGAAG NNNNNNNTCAGCACCATGACTGCAAATGAATACTTTGAGAAGCATCCTGAGEST: gi|110430091|gb|EC996620.1|EC996620
genomic: AGGAATCTGAGCGCCTGGAGAAGGAGATTGCTGAAGTCCAAGAGCTGAAGgtaacatgat ... atcttaacagAAAAAAATCAGCACCATGACTGCAAATGAATACTTTGAGAAGCATCCTGAG
EST: AGGAATCTGAGCGCCTGGAGAAGGAGATTGCTGAAGTCCAAGAGCTGAAG NNNNNNNTCAGCACCATGACTGCAAATGAATACTTTGAGAAGCATCCTGAG
genomic: AGGAATCTGAGCGCCTGGAGAAGGAGATTGCTGAAGTCCAAGAGCTGAAGgtaacatgat ... atcttaacagAAAAAAATCAGCACCATGACTGCAAATGAATACTTTGAGAAGCATCCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGCCTGGAGAAGGAGATTGCTGAAGTCCAAGAGCTGAAGgtaacatgatatgattactcacttccatttccagcttggtctaatatatgattcttataggtgtgtgattgatcttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG