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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGATCTCCAAAAACCACAAGCTGAGCTTGATGGTAAGGCGTGTGCAGCTGTTGGACAAAATAACCTTATGGCTCTCTATGACACATTATTTAGCCAGgtaaagcacataatttgctttttatctgttctgtgagtacaggggattgatttgtattttgtcttcgattatctactaatgcgccccttgctagttggttctgttggttgatgttttcaatacacatgtcattctctactcttttaatttttgaatctaatgccctctttttttaattttctttatatccag

Basic information

species Vitis vinifera
transcript Vv13s0019g02360.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G028535_T02 (Zea mays), 5'ss of exon 4
TGCTGATCTCCAAAAACCACAAGCTGAGCTTGATGGTAAGGCGTGTGCAGCTGTTGGACAAAATAACCTTATGGCTCTCTATGACACATTATTTAGCCAGgtaaagcacataatttgctttttatctgttctgtgagtacaggggattgatttgtattttgtcttcgattatctactaatgcgccccttgctagttggttctgttggttgatgttttcaatacacatgtcattctctactcttttaatttttgaatctaatgccctctttttttaattttctttatatccag
 || ||||| ||||| || ||     |  ||||||| ||||| ||||| |||||||| |||| |  ||| |||||  |||||||||||||||||||||| || |  ||   |     |   || | | | ||    ||| |  |  ||      ||  | || |   |     | || ||  |      |                                                                                                      
CGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCTGCTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAAgtgagtcatgca--ccaccaatt-tgtatcctagtggtaaaaagagtttggcgttacct-gtttctaacaggatgcttatatgattacag------------------------------------------------------------------------------------------------------

upper sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G03830.1 (Glycine max), 5'ss of exon 4
TGCTGATCTCCAAAAACCACAAGCTGAGCTTGATGGTAAGGCGTGTGCAGCTGTTGGACAAAATAACCTTATGGCTCTCTATGACACATTATTTAGCCAGgtaaagcacataatttgctttttat--ctgttctgtgagtacaggggattgatttgtattttgtcttcgattatctactaatgcgccccttgctagttggttctgttggttgatgttttcaatacacatgtcattctctactcttttaatttttgaatctaatgccctctttttttaattttctttatatccag
|||||| || || || || |||| ||| |||||||| ||||| ||||| |||||||||||||| | |||||||||||| |||||    || ||||| |||||||      |   ||| | || ||  |||  || | |    | |   ||| |      | |   | | | | ||  | |         ||| |  |   |  ||    || || ||    |||   || |  ||  ||  | ||   ||   |||   | |||   |   |  ||  | | | |    | |||
TGCTGACCTTCAGAAGCCGCAAGTTGAACTTGATGGCAAGGCTTGTGCTGCTGTTGGACAAAACAGCCTTATGGCTCTTTATGATGTTTTGTTTAGTCAGgtaattgttgttgattgatgttcatgactgaactatcatcttatgc--ttgctc---gctctaattccaaatgtcatcaagattttgttttgtttatccttaatgccatttcattttccttata---at-ttgttgccttattttaggatagctgacagtgatgtgttaactcctttctctacctgtcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87586525|gb|DY474768.1|DY474768
EST:     GACACATTATTTAGCCAG                         CTGGATGTGACATCAGCTCAGCTTCTTGTGACTGATAATGATTTTAGGGAT
genomic: GACACATTATTTAGCCAGgtaaagcaca ... ttatatccagCTGGATGTGACATCAGCTCAGCTTCTTGTGACTGATAATGATTTTAGGGAT