1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAATGGAAAATCTGAGCTACATCCTTGCAAGTACAGAGTTGTTCGGACTGATCAGACTTACTGTGGAGAGATTCGAGTTGGCATCAATTTCACTCCAAAGgtatttttactcttttagcagttacaattagcaaatcactttatttatatgaaaaggaaaggagtgaaaaggaaaggggaatgcaactctagctctcgtc...
species | Vitis vinifera |
transcript | Vv13s0019g01490.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCAGACTTACTGTGGAGAGATTCGAGTTGGCATCAATTTCACTCCAAAG GTAAAAGAGGAAAAAGATGAAATACAGGTCGGAGGATGGAAGGAAAGTGATEST: gi|37186622|gb|CF605975.1|CF605975
genomic: ATCAGACTTACTGTGGAGAGATTCGAGTTGGCATCAATTTCACTCCAAAGgtatttttac ... gatttctcagGTAAAAGAGGAAAAAGATGAAATACAGGTCGGAGGATGGAAGGAAAGTGAT
EST: ATCAGACTTACTGTGGAGAGATTCGAGTTGGCATCAATTTCACTCCAAAG GTAAAAGAGGAAAAAGATGAAATACAGGTCGGAGGATGGAAGGAAAGTGATEST: gi|110690874|gb|EE068328.1|EE068328
genomic: ATCAGACTTACTGTGGAGAGATTCGAGTTGGCATCAATTTCACTCCAAAGgtatttttac ... gatttctcagGTAAAAGAGGAAAAAGATGAAATACAGGTCGGAGGATGGAAGGAAAGTGAT
EST: ATCAGACTTACTGTGGAGAGATTCGAGTTGGCATCAATTTCACTCCAAAG GTAAAAGAGGAAAAAGATGAAATACAGGTCGGAGGATGGAAGGAAAGTGAT
genomic: ATCAGACTTACTGTGGAGAGATTCGAGTTGGCATCAATTTCACTCCAAAGgtatttttac ... gatttctcagGTAAAAGAGGAAAAAGATGAAATACAGGTCGGAGGATGGAAGGAAAGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGGAAAATCTGAGCTACATCCTTGCAAGTACAGAGTTGTTCGGACTGATCAGACTTACTGTGGAGAGATTCGAGTTGGCATCAATTTCACTCCAAAGgtatttttactcttttagcagttacaattagcaaatcactttatttatatgaaaaggaaaggagtgaaaaggaaaggggaatgcaactctagctctcgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgaaa