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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATAAAACTGGCAGACAACAGATTGGTTGAAACTGTTGGAATACCAGTTGAACATGACAAAGGCTCATTTCGCCTTACTGCATGTGTCTCATCACAGgtgcttttctaaccagaaaatcaaccagatagttccctggtttgggttttcttataccaatgaagaaatcatttttgtccaccttaatgaaatattcctttgttgatgttatttttgaataattataataattttctcccggcctactttaaatatccag

Basic information

species Vitis vinifera
transcript Vv13s0019g01070.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71859986|gb|DT009041.1|DT009041
EST:     TTGAACATGACAAAGGCTCATTTCGCCTTACTGCATGTGTCTCATCACAG                         GTTGGCTGTCCATTGCGCTGTTCATTTTGTGCCACTGGCAAGGGAG-TTAC
genomic: TTGAACATGACAAAGGCTCATTTCGCCTTACTGCATGTGTCTCATCACAGgtgcttttct ... aaatatccagGTTGGCTGTCCATTGCGCTGTTCATTTTGTGCCACTGGCAAGGGAGGTTAC
EST: gi|71861628|gb|DT010683.1|DT010683
EST:     TTGAACATGACAAAGGCTCATTTCGCCTTACTGCATGTGTCTCATCACAG                         GTTGGCTGTCCATTGCGCTGTTCATTTTGTGCCAC
genomic: TTGAACATGACAAAGGCTCATTTCGCCTTACTGCATGTGTCTCATCACAGgtgcttttct ... aaatatccagGTTGGCTGTCCATTGCGCTGTTCATTTTGTGCCAC