Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGGGATTCTGATCAGAAGTTGGCAGAAGGAATTTCCCTATATTCTATTGCATCGGAAATGTATGAGAAAGCTTCAATTGTTGGACCACTGATAACAgtatgaacccaggacttcattttgtttctttctcctaatttttactgtttccagagctttaggttttctgtatgttaaagtttttgcaaatgctgaatagcttcccttttttattttagctcattcttgcttttacctccatcaagttttttcccttagcaccatacatgtgtttgttag

Basic information

species Vitis vinifera
transcript Vv12s0142g00670.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G03760.1 (Glycine max), 5'ss of exon 4
GTAGGGGATTCTGATCAGAAGTTGGCAGAAGGAATTTCCCTATATTCTATTGCATCGGAAATGTATGAGAAAGCTTCAATTGTTGGACCACTGATAACAgtatgaacccaggacttcattttgtttctttctcctaatttttactgtttccagagctttaggttttctgtatgttaaagtttttgcaaatgctgaatagcttcccttttttattttagctcattcttgcttttacctccatcaagttttttcccttagcaccatacatgtgtttgttag
|| || ||||||||||||||||||||||| |||||||| || || || |||||| | ||  ||||||  |||||   |||| |||  || || ||||| |||||    | | |       || ||||||  |    | || | ||| ||   ||   |||  | |  | | ||||  |      | |  |  |||| |   |                                                                             
GTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCTCCTCTAATAACGgtatgccttctgaaacca---ttatttcttgattgctagttcttctgattaatgattgttac-tatcatttctgtttcataagaagtaggttttgaaaaaaatt----------------------------------------------------------------------------

upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G41510.1 (Glycine max), 5'ss of exon 5
GTAGGGGATTCTGATCAGAAGTTGGCAGAAGGAATTTCCCTATATTCTATTGCATCGGAAATGTATGAGAAAGCTTCAATTGTTGGACCACTGATAACAgtatgaacccaggact--tcattttgtttctttctcctaatttttactgtttccagagctttaggttttctgta-tgttaaagtttttgcaaatgct---gaatagcttcccttttttattttagct-cattcttg-cttttacctccat---caagttttt--tcccttagc--accatacatgtgtttgttag
|| || ||||||||||||||||||||||| ||||||||  | || |||||||  || ||   |||    |||||   |||| ||| ||| |||||||||||||||   |||      || |||| | | | | |  |    |   || |     | | |||  ||| ||  |  | || |  | |  |||  |  |   | |||  || | |||  ||   |   | || | | | || |    |||||   || | || |  | ||||  |  |   || ||   |||| |||
GTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGTTGTACTCTATTGTGTCTGATTCGTACACTAAAGCAGGAATTCTTGCACCTCTGATAACAgtatgacttcagatacaatctttttctctttatttttttgcatcagctatagtttgtgttttttgttatcattgctatttatttataagcagttattttagtatatttttcttttactaaaatgattgcaatttagtctgtctggtccatatacaggcttctaatgcctttcctaatggtatatac-tttggtag