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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTACCAGCAAGAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGgtaaagttcatgagatgttatgtttaggctcttatgtgatacttctgaaattggaaattttgattggaagaaattgttatatattttcag

Basic information

species Vitis vinifera
transcript Vv12s0142g00360.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110728991|gb|EE105103.1|EE105103
EST:     GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAG                         GCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
genomic: GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGgtaaagttca ... atattttcagGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
EST: gi|110726323|gb|EE102002.1|EE102002
EST:     GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAG                         GCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
genomic: GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGgtaaagttca ... atattttcagGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
EST: gi|110715529|gb|EE093682.1|EE093682
EST:     GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAG                         GCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
genomic: GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGgtaaagttca ... atattttcagGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
EST: gi|110730325|gb|EE107273.1|EE107273
EST:     GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAG                         GCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
genomic: GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGgtaaagttca ... atattttcagGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
EST: gi|30298144|gb|CB974938.1|CB974938
EST:     GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAG                         GCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
genomic: GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGgtaaagttca ... atattttcagGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
EST: gi|30135782|gb|CB921120.1|CB921120
EST:     GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAG                         GCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
genomic: GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGgtaaagttca ... atattttcagGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
EST: gi|110710338|gb|EE086596.1|EE086596
EST:     GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAG                         GCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
genomic: GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGgtaaagttca ... atattttcagGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
EST: gi|30133145|gb|CB918484.1|CB918484
EST:     GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAG                         GCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
genomic: GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGgtaaagttca ... atattttcagGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
EST: gi|30298778|gb|CB975572.1|CB975572
EST:     GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAG                         GCATATTCTGGGTGAGGCCCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
genomic: GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGgtaaagttca ... atattttcagGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
EST: gi|110726263|gb|EE101892.1|EE101892
EST:     GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAG                         GCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA
genomic: GAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGgtaaagttca ... atattttcagGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAA