1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGACAACTTTGAATTTGATGGACAGCATAAAAGGAAGTTAGAGGCTCTAAGCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAGgttaatacccctgactttcctaataaatttctcaactggattgattaattgggcggatattgttgcctatgcatctttagtgaagattgatttattatctgacttttgtgggctatgcag
species | Vitis vinifera |
transcript | Vv12s0142g00340.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAG CTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTAEST: gi|351057434|gb|FQ454116.1|FQ454116
genomic: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAGgttaataccc ... ggctatgcagCTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTA
EST: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAG CTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTAEST: gi|351045925|gb|FQ441308.1|FQ441308
genomic: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAGgttaataccc ... ggctatgcagCTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTA
EST: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAG CTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTAEST: gi|351022143|gb|FQ438728.1|FQ438728
genomic: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAGgttaataccc ... ggctatgcagCTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTA
EST: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAG CTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTAEST: gi|352790288|gb|FQ481487.1|FQ481487
genomic: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAGgttaataccc ... ggctatgcagCTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTA
EST: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAG CTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTAEST: gi|352790808|gb|FQ478531.1|FQ478531
genomic: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAGgttaataccc ... ggctatgcagCTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTA
EST: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAG CTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTA
genomic: GCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAGgttaataccc ... ggctatgcagCTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACAACTTTGAATTTGATGGACAGCATAAAAGGAAGTTAGAGGCTCTAAGCCCCAGCTGCCTCTCCCTTATGAATCATCTACGGATTTATATTCCTGAGgttaatacccctgactttcctaataaatttctcaactggattgattaattgggcggatattgttgcctatgcatctttagtgaagattgatttattatctgacttttgtgggctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC