1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAGgtactcacatttgattctctcctatgttttagcagttcatttcgtcttacatttttctctctttctcggcttttcttgttgctacag
species | Vitis vinifera |
transcript | Vv12s0059g02280.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAG AATGCCATTCCAGTGCTGATTGGAACCAAGTTTGACGATTTCATCCAACTTEST: gi|110383289|gb|EC947654.1|EC947654
genomic: TGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAGgtactcacat ... gttgctacagAATGCCATTCCAGTGCTGATTGGAACCAAGTTTGACGATTTCATCCAACTT
EST: TGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAG AATGCCATTCCAGTGCTGATTGGAACCAAGTTTGACGATTTCATCCAACTTEST: gi|34544942|gb|CF513174.1|CF513174
genomic: TGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAGgtactcacat ... gttgctacagAATGCCATTCCAGTGCTGATTGGAACCAAGTTTGACGATTTCATCCAACTT
EST: TGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAG AATGCCATTCCAGTGCTGATTGGAACCAAGTTTGACGATTTCATCCAACTT
genomic: TGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAGgtactcacat ... gttgctacagAATGCCATTCCAGTGCTGATTGGAACCAAGTTTGACGATTTCATCCAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAGgtactcacatttgattctctcctatgttttagcagttcatttcgtcttacatttttctctctttctcggcttttcttgttgctacag
- - - - - - - - - - AAGCAA
- - - - - - - - - - AGCAAG
- - - - - - - - - - - - AAGGAA