1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcag
species | Vitis vinifera |
transcript | Vv12s0059g01930.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|77584192|gb|DV221151.1|DV221151
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|27584710|gb|CB007405.1|CB007405
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|349811810|gb|FQ410607.1|FQ410607
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|27586086|gb|CB008781.1|CB008781
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|110385536|gb|EC950069.1|EC950069
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|71884369|gb|DT033424.1|DT033424
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|27584919|gb|CB007614.1|CB007614
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|110376126|gb|EC941168.1|EC941168
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|110357026|gb|EC920280.1|EC920280
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|71870414|gb|DT019469.1|DT019469
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|110699817|gb|EE077160.1|EE077160
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|71870410|gb|DT019465.1|DT019465
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|110722937|gb|EE099679.1|EE099679
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCEST: gi|110722049|gb|EE097937.1|EE097937
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcag
- - - - - - - GGAAGA
- - - - - - - - AAGATG
- - - - - - - - - ATGCTG