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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGCTTTCATATGATATGTAGTGGCAGGGACAAGATTGAAACTCCAGAACAGgtgattttttcctgttacttgtgagataactagtttgattgactatggtttatcatcaactttgatgtttagagtagacttcattcttctagattaggtgtttgtagagagaaaaacttacttttcatggtcatacattccag

Basic information

species Vitis vinifera
transcript Vv12s0059g01220.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g01220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 4
GGTGGCTTTCATATGATATGTAGTGGCAGGGACAAGATTGAAACTCCAGAACAGgtgattttttcctgttacttgtgagataactagtttgattgactatggtttatcatcaactttgatgtttagagtagacttcattcttctagattaggtgtttgtagagagaaaaacttacttttcat--ggtcatacattccag---
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GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAGgtatatctttgcgcttttatgtgcaaatgcttatttaatc---------cctttatctgcctt-----tcagggta--tttggctattttg--ttgcctagtttcactagcattttcttattttaaattctgtcatgtatttgagcag