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GGAATGGAATATCTCGAGGAAAGAACTTTTGGAACTTGTAGAAGCTGGCATTCTAGTAGAAGATGATATCAAACAAGTTACAGCAGCGAAATTTAATCCTgtgagttccaaaaccttcaacataagttgatgggtcaaaagtttggtttgtccaaattcttcacatagtagttgtagtaacaaaattgcaagggccatgt...
species | Vitis vinifera |
transcript | Vv12s0059g01150.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AACAAGTTACAGCAGCGAAATTTAATCCT AACAGATGTGGATTTGAGGGGAAGGGCGAGATTTGGGTTGAAGACATTCTTEST: gi|26258630|gb|CA809693.1|CA809693
genomic: AACAAGTTACAGCAGCGAAATTTAATCCTgtgagttcca ... aactgcccagAACAGATGTGGATTTGAGGGGAAGGGCGAGATTTGGGTTGAAGACATTCTT
EST: TTCTAGTAGAAGATGATATCAAACAAGTTACAGCAGCGAAATTTAATCCT AACAGATGTGGATTTGAGGGGAAGGGCGAGATTTGGGTTGAAGACATTCTTEST: gi|110712999|gb|EE088546.1|EE088546
genomic: TTCTAGTAGAAGATGATATCAAACAAGTTACAGCAGCGAAATTTAATCCTgtgagttcca ... aactgcccagAACAGATGTGGATTTGAGGGGAAGGGCGAGATTTGGGTTGAAGACATTCTT
EST: TTCTAGTAGAAGATGATATCAAACAAGTTACAGCTGTGAAATTTAATCCT AACAGATGTGGATTTGAGGGGAAGGGCGAGATTTGGGTTTGA-GACATTCTEST: gi|32271134|gb|CD720293.1|CD720293
genomic: TTCTAGTAGAAGATGATATCAAACAAGTTACAGCAGCGAAATTTAATCCTgtgagttcca ... aactgcccagAACAGATGTGGATTTGAGGGGAAGGGCGAGATTTGGGTT-GAAGACATTCT
EST: AACAAGTTACAGCAGCGAAATTTAATCCT AACAGATGTGGATTTGAGGGGAAGGGCGAGATTTGGGTTGAAGACATTCTT
genomic: AACAAGTTACAGCAGCGAAATTTAATCCTgtgagttcca ... aactgcccagAACAGATGTGGATTTGAGGGGAAGGGCGAGATTTGGGTTGAAGACATTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATGGAATATCTCGAGGAAAGAACTTTTGGAACTTGTAGAAGCTGGCATTCTAGTAGAAGATGATATCAAACAAGTTACAGCAGCGAAATTTAATCCTgtgagttccaaaaccttcaacataagttgatgggtcaaaagtttggtttgtccaaattcttcacatagtagttgtagtaacaaaattgcaagggccatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa