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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGCAGCTCTGATGGGTTGCCACATCTAGTCTATGTATCCAGAGAGAAGCATCCCAAGCATCCACACCATTACAAAGCCGGTGCCATGAATGTTCTGgtaaggaagccccttgaattggtataattactgatattccttcttttcccctaattgtttcatgataaacag

Basic information

species Vitis vinifera
transcript Vv12s0059g01000.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349807790|gb|FQ402181.1|FQ402181
EST:     AGCATCCCAAGCATCCACACCATTGCAAAGCCGGTGCCATGAATGTTCTG                         ACCAGGGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC
genomic: AGCATCCCAAGCATCCACACCATTACAAAGCCGGTGCCATGAATGTTCTGgtaaggaagc ... tgataaacagACCAGAGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC
EST: gi|349817993|gb|FQ407982.1|FQ407982
EST:     AGCATCCCAAGCATCCACACCATTGCAAAGCCGGTGCCATGAATGTTCTG                         ACCAGGGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC
genomic: AGCATCCCAAGCATCCACACCATTACAAAGCCGGTGCCATGAATGTTCTGgtaaggaagc ... tgataaacagACCAGAGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC
EST: gi|349822374|gb|FQ412638.1|FQ412638
EST:     AGCATCCCAAGCATCCACACCATTGCAAAGCCGGTGCCATGAATGTTCTG                         ACCAGGGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC
genomic: AGCATCCCAAGCATCCACACCATTACAAAGCCGGTGCCATGAATGTTCTGgtaaggaagc ... tgataaacagACCAGAGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC
EST: gi|349807920|gb|FQ402311.1|FQ402311
EST:     AGCATCCCAAGCATCCACACCATTGCAAAGCCGGTGCCATGAATGTTCTG                         ACCAGGGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC
genomic: AGCATCCCAAGCATCCACACCATTACAAAGCCGGTGCCATGAATGTTCTGgtaaggaagc ... tgataaacagACCAGAGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC
EST: gi|349817115|gb|FQ399862.1|FQ399862
EST:     AGCATCCCAAGCATCCACACCATTGCAAAGCCGGTGCCATGAATGTTCTG                         ACCAGGGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC
genomic: AGCATCCCAAGCATCCACACCATTACAAAGCCGGTGCCATGAATGTTCTGgtaaggaagc ... tgataaacagACCAGAGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC
EST: gi|349825728|gb|FQ421827.1|FQ421827
EST:     AGCATCCCAAGCATCCACACCATTACAAAGCCGGTGCCATGAATGTTCTG                         ACCAGAGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC
genomic: AGCATCCCAAGCATCCACACCATTACAAAGCCGGTGCCATGAATGTTCTGgtaaggaagc ... tgataaacagACCAGAGTCTCTGGAGCTATGACAAATGCTCCTTTCATGCTGAACGTAGAC