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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGGACAGGCTCCTGCTAGACAAGCTGCATTAGGTGCAGGAATACCTAATTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactctatcatcagaaacagcatcttttcctctttccccaaaactgacactaaagtgtaatatcatggttcttttaatgctggtaattgcag

Basic information

species Vitis vinifera
transcript Vv12s0057g01200.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os09g07830.1 (Oryza sativa), 5'ss of exon 4
TTAGGACAGGCTCCTGCTAGACAAGCTGCATTAGGTGCAGGAATACCTAATTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactctatcatcagaaacagcatcttttcctctttccccaaaactgacactaaagtgtaatatcatgg--ttcttttaatgctggtaattgcag
|| || || |||||||| ||||||||||| ||||||||||| ||||| ||  |||| || || | | |  | ||||||||||| ||||| || |||||||||  || |   |||| ||  |     ||| |   |  |   | | || | | | | |  ||    |||||||  || |||| ||  |  |   |||||
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTTTAGGTGCAGGGATACCAAACACAGTTGTTTGCAGCGCAGTTAACAAAGTTTGCGCATCTGGCATGAAAGgttacagt---tcatgaggcagcctttctataaattctgttcaagaaattatatttacctg----atcatgggcttgtttttat-ttcctttctgcag

upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G00760.1 (Glycine max), 5'ss of exon 4
TTAGGACAGGCTCCTGCTAGACAAGCTGCATTAGGTGCAGGAATACCTAATTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactctatcatcagaaacagcatcttttcctctttccccaaaactgacactaaagtgtaatatcatggttcttttaatgctggtaattgcag
|| || || |||||||| |||||||||||  | || ||||||||| | ||||||||  |||| || ||| | |||||||||||||||||||||||||||||||    | ||  |  |  ||    || | || || | |      |  | | | || ||   ||    ||    |||    | ||||| |||||||
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttataataaaaacaattctatttgtttctttgtatttttatttaaaaatatagaaaaaggatattaacctt---gttctggttattgcag

upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G47860.2 (Glycine max), 5'ss of exon 4
TTAGGACAGGCTCCTGCTAGACAAGCTGCATTAGGTGCAGGAATACCTAATTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactctatcatcagaaacagcatcttttcctctttccccaaaactgacactaaagtgtaatatcatggttcttttaatgctggtaattgcag
|| || || |||||||| |||||||||||  | || ||||||||| | ||||||||  ||||||| ||  | ||||||||||||||||||||||||||||||     | |   |  |  ||    || | || || | |           | | || ||   ||    ||    |||    | ||||| |||||||
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtttgtttattataaaattaattctatttgtttctttgtattttgtttaaaaaatataggaaaaggatattaaactt---gttctggttattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110398909|gb|EC965389.1|EC965389
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110699364|gb|EE076300.1|EE076300
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110403296|gb|EC964774.1|EC964774
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|71859096|gb|DT008151.1|DT008151
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110701385|gb|EE078893.1|EE078893
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|161716985|gb|FC066530.1|FC066530
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|161717757|gb|FC064725.1|FC064725
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|71866622|gb|DT015677.1|DT015677
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|161712803|gb|FC062326.1|FC062326
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110398035|gb|EC964108.1|EC964108
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|32269649|gb|CD718808.1|CD718808
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|30254555|gb|CB971300.1|CB971300
EST:     GTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: GTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|71875811|gb|DT024866.1|DT024866
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110723077|gb|EE099979.1|EE099979
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110686757|gb|EE064757.1|EE064757
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|161720962|gb|FC070684.1|FC070684
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110698167|gb|EE075418.1|EE075418
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110685325|gb|EE063616.1|EE063616
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110723249|gb|EE100343.1|EE100343
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|71855093|gb|DT004148.1|DT004148
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110371396|gb|EC935385.1|EC935385
EST:     CTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: CTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|71859317|gb|DT008372.1|DT008372
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|34543095|gb|CF511327.1|CF511327
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|77587675|gb|DV223012.1|DV223012
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|30299187|gb|CB975981.1|CB975981
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110702702|gb|EE078902.1|EE078902
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|110364569|gb|EC927918.1|EC927918
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
EST: gi|77586011|gb|DV222101.1|DV222101
EST:     TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAG                         CAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG
genomic: TTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactct ... gtaattgcagCAACAATGCTCGCAGCACAGAGTATCCAGTTGGGTGTCAATGATATTGTTG