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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGCAAATTCTCACGAAAGGGAATCCACATTATATATGTGGAGCACGCGTACTGGTGAAACCTTATCGAGAAAAGGCCTCATCCAGGACTGTTGACAGgtaaaatttgatttgagtcgcttatggtattgtcgttttccacatagattctgcttccatcatggcatagaatttcttgttttgcctctcaaaactctca...

Basic information

species Vitis vinifera
transcript Vv12s0057g00570.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698002|gb|EE075516.1|EE075516
EST:     GTACTGGTGAAACCTTATCGAGAAAAGGCCTCATCCAGGACTGTTGACAG                         GAGGCAGCATCCTATGTATTACAGTCCACACTTCATTGATGAGGATTCTGA
genomic: GTACTGGTGAAACCTTATCGAGAAAAGGCCTCATCCAGGACTGTTGACAGgtaaaatttg ... tttttaacagGAGGCAGCATCCTATGTATTACAGTCCACACTTCATTGATGAGGATTCTGA
EST: gi|161717052|gb|FC068460.1|FC068460
EST:     GTACTGGTGAAACCCTATCGAGAAAAGGCCTCGTCCAGAACTGTTGACAG                         GAGGCAGCATCCTATGTAT-ACAGTC-ACACTTCAT-GATGGGGAT
genomic: GTACTGGTGAAACCTTATCGAGAAAAGGCCTCATCCAGGACTGTTGACAGgtaaaatttg ... tttttaacagGAGGCAGCATCCTATGTATTACAGTCCACACTTCATTGATGAGGAT