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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGAGGAACAATTGAAAGCATATCTTCACTTCAAAGAGGAGGCAAAACGCCGGGATCACAGACGCCTTGGACAAGATCTTGATCTGTTCTCTATACAGgtagctccctattggacttgtaccagaatggtttggagtgaggattgataaatcagttttcttcttcttttcaattttattgttggattgctccttatccactagtatgaattcattcctttaatatcttaggcttcttgatgaaacttctgcag

Basic information

species Vitis vinifera
transcript Vv12s0057g00400.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0057g00400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G37550.1 (Glycine max), 5'ss of exon 4
GAATGAGGAACAATTGAAAGCATATCTTCACTTCAAAGAGGAGGCAAAACGCCGGGATCACAGACGCCTTGGACAAGATCTTGATCTGTTCTCTATACAGgtagctccctattggacttgtaccagaatggtttggagtgaggattgataaatcagttttcttcttcttttcaattttattgttggattgctccttatccactagtatgaat-tcattcctttaatatcttaggcttcttgatgaaacttctgcag
|||||| || || |||||||| || ||||||||||||||||| || || || || |||||||| ||||| || |||||||||||| |||| ||||||||||||      ||   |   |||      ||  || | | ||     || | | | | ||| |||  | ||||  ||||||||| ||||       |||     || | | | | |   |  |||  |   | |    | ||  | | | |  |||||
GAATGAAGAGCAGTTGAAAGCTTACCTTCACTTCAAAGAGGAAGCCAAGCGTCGAGATCACAGGCGCCTAGGGCAAGATCTTGATTTGTTTTCTATACAGgtaaaat--taacagtgatgttt----atacttcgtattgtt--ctgctcattgattttgctttctatttttgattttattgatggaacagatattagggtttatttttattattcctaattttgtgggtaaataattttact-acattcgtgcag

upper sequence: Vv12s0057g00400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G13740.1 (Glycine max), 5'ss of exon 6
GAATGAGGAACAATTGAAAGCATATCTTCACTTCAAAGAGGAGGCAAAACGCCGGGATCACAGACGCCTTGGACAAGATCTTGATCTGTTCTCTATACAGgtagctccctattggacttgtaccagaatggtttggagtgaggattgataaatcagttttcttcttcttttcaattttattgttggattgc-----tccttatccactagtatgaattcattcctttaatatcttaggcttcttgatgaaacttctgcag
|||||  || || ||||| || || ||||||||||||| ||| || || |  || ||||||||| |||| || |||||||||||| |||| ||||| |||||| |        || ||  |   |    | ||||   ||   ||||||   |  | |||||  || || | |  || ||   |    |||     |   | |  | || |   ||||   |   | ||||  ||    || || ||| |          
GAATGCAGAGCAGTTGAAGGCTTACCTTCACTTCAAAGGGGAAGCTAAGCATCGAGATCACAGATGCCTAGGGCAAGATCTTGATTTGTTTTCTATGCAGgta-caattagcagggctgtttatacttcgttttgttctgcacattgat---tttgctttctattttttattatattgatgaatcagatgctagggtttctttttattattcctaattttatgggtaaataattttactttattcatgcag---------