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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGATGTTGGGAGATAATGCGGAATGGGCCAACTGTTGGCAGTGTGCCCAAGGCATCAATATCACATGACCAGCCGgtaacaaattattctatttttacaaaatctacatttttatttatttttctttttttggaaatttttgttttggattttaaatttggtacatgttatttttgtgtag

Basic information

species Vitis vinifera
transcript Vv12s0055g00900.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856427|gb|DT005482.1|DT005482
EST:     GGCCAACTGTTGGCAGTGTGCCCAAGGCATCAATATCACATGACCAGCCG                         GTTCTATGCTCTGCTTGGAAGGATGATGGAACAACTGTCTTCTCTGGAGGC
genomic: GGCCAACTGTTGGCAGTGTGCCCAAGGCATCAATATCACATGACCAGCCGgtaacaaatt ... ttttgtgtagGTTCTATGCTCTGCTTGGAAGGATGATGGAACAACTGTCTTCTCTGGAGGC
EST: gi|30125531|gb|CB910870.1|CB910870
EST:     GGCCAACTGTTGGCAGTGTGGGCAAGGCATCAATATCACATGACCAGCCG                         GTTCTATGCTCTGCTTGGAAGGACGATGGAACAACTGTCTTCTCTGGAGGC
genomic: GGCCAACTGTTGGCAGTGTGCCCAAGGCATCAATATCACATGACCAGCCGgtaacaaatt ... ttttgtgtagGTTCTATGCTCTGCTTGGAAGGATGATGGAACAACTGTCTTCTCTGGAGGC
EST: gi|351043163|gb|FQ451336.1|FQ451336
EST:     GGCCAACTGTTGGCAGTGTGCCCAAGGCATCAATATCACATGACCAGCCG                         GTTCTATGCCCTGCTTGGAAGGATGATGGAACAACTGTCTTCTCTGGAGGC
genomic: GGCCAACTGTTGGCAGTGTGCCCAAGGCATCAATATCACATGACCAGCCGgtaacaaatt ... ttttgtgtagGTTCTATGCTCTGCTTGGAAGGATGATGGAACAACTGTCTTCTCTGGAGGC
EST: gi|71859699|gb|DT008754.1|DT008754
EST:     GGCCAACTGTTGGCAGTGTGCCCAAGGCATCAATATCACATGACCAGCCG                         GTTCTATGCTCTGCTTGGAAGGATGATGGAACAACTGTCTTCTCTGGAGGC
genomic: GGCCAACTGTTGGCAGTGTGCCCAAGGCATCAATATCACATGACCAGCCGgtaacaaatt ... ttttgtgtagGTTCTATGCTCTGCTTGGAAGGATGATGGAACAACTGTCTTCTCTGGAGGC