Sequence
atgc intronic sequence ATGC exonic sequenceGATGGTGCTGGTCGTGTTGGGAAAATGCTTTTTGCACGGCAAGGGAAGAAGTTTGATTATGATCTAAAACAGgtaaaattagtctaagcactagttgattttgaagtcaacttttactggactgaattaacatatattattcattttcttaaaatttgtgatgtgtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g01870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g66350.1 (Oryza sativa), 5'ss of exon 4
GATGGTGCTGGTCGTGTTGGGAAAATGCTTTTTGCACGGCAAGGGAAGAAGTTTGATTATGATCTAAAACAGgtaaaattagtctaagca--ctagttgattttgaagtcaacttttactggactgaattaacatatattattcattttcttaaaatttgtgatgtgtttcag
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GATGGTGCAGGTCGTGTCGGAAAAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGgtaaatcatatggaagcaagtccatttatgcaatattcacattattcacaatttctttgtcccatgt-acacaactgactgaggctgaaaattt-ctgcag
upper sequence: Vv12s0035g01870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os05g34650.1 (Oryza sativa), 5'ss of exon 4
GATGGTGCTGGTCGTGTTGGGAAAATGCTTTTTGCACGGCAAGGGAAGAAGTTTGATTATGATCTAAAACAGgtaaaattagtctaagcactagttgattttgaagtcaacttttactggactgaattaacatatattattcattttcttaaaatttgtgatgtgtttcag
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GATGGAGCTGGCCGAGTTGGAAAAATGCTTTTTGCCCGCCAAGGGAAGAAATTTGACTACGACCTAAAGCAGgtgcaatatttggaatccatgttttgcaattattttgagctttattttgctctatgcaaaaaactgatcgaaaacactttcacttcag-----------
upper sequence: Vv12s0035g01870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G081188_T01 (Zea mays), 5'ss of exon 4
GATGGTGCTGGTCGTGTTGGGAAAATGCTTTTTGCACGGCAAGGGAAGAAGTTTGATTATGATCTAAAACAGgtaaa---attagtctaagcactagttgattttgaagtcaacttttactggactgaat---taacatatattattcattttcttaaaatttgtgatgtgtttcag
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GATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGgtaaacatgtggaaccgtgtattcacttttttcaatatccatttccaatttattggtcccataatatacatcactaaatgaaaccaaaatcat-atgcag-----
upper sequence: Vv12s0035g01870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G833124_T01 (Zea mays), 5'ss of exon 4
GATGGTGCTGGTCGTGTTGGGAAAATGCTTTTTGCACGGCAAGGGAAGAAGTTTGATTATGATCTAAAACAGgtaaaattagtctaagcactagttgattttgaagtcaacttttactggactgaattaacatatattattcattttcttaaaatttgtgatgtgtttcag
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GATGGGGCTGGGCGTGTTGGAAAGATGCTTTTTGCCCGCCAAGGGAAGAAATTTGATTATGACCTGAAGCAGgtgcatata--ttaggt-----tcaatgt----gtgcccttctgcagtacttagttttctttcatgctaatgactatttgaaatgaaaatttcctatag
upper sequence: Vv12s0035g01870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC218035.3_FGT004 (Zea mays), 5'ss of exon 4
GATGGTGCTGGTCGTGTTGGGAAAATGCTTTTTGCACGGCAAGGGAAGAAGTTTGATTATGATCTAAAACAGgtaaaattagtctaagcactagttgattttgaagtcaacttttactggactgaattaacatatattattcattttcttaaaatttgtgatgtgtttcag
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GATGGGGCTGGGCGTGTTGGAAAGATGTTTTTTGCCCGCCAAGGGAAGAAATTTGATTATGACCTGAAGCAGgtgcatatattaggttcaatgtgtgcccttctgcagtactttttctttctttcatgctaatgactaattgaaatg---aaaatttcttatag-------
upper sequence: Vv12s0035g01870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G49820.1 (Arabidopsis thaliana), 5'ss of exon 4
GATGGTGCTGGTCGTGTTGGGAAAATGCTTTTTGCACGGCAAGGGAAGAAGTTTGATTATGATCTAAAACAGgtaaaattagtctaagcactagttgattttgaagtcaacttttactggactgaattaacatatattattcattttcttaaaatttgtgatgtgtttcag
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GATGGTGCTGGGCGTGTTGGGAAAATGCTTTTTGCGAGGCAGGGAAAGAAATTTGATTATGATTTGAAACAGgtac--ttattccattacttaacaaatgcgatggttgactctctctctcacgtttaaactcactttggcttgcag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352777603|gb|FQ466656.1|FQ466656EST: AAATGCTTTTTGCACGGCAAGGGAAGAAGTTTGATTATGATCTAAAACAG CTACGATTGGCGGGTGATCTCCTTATGGAGTTGGGTGCTGGGGTAGAGTTG
genomic: AAATGCTTTTTGCACGGCAAGGGAAGAAGTTTGATTATGATCTAAAACAGgtaaaattag ... tgtgtttcagCTACGATTGGCGGGTGATCTCCTTATGGAGTTGGGTGCTGGGGTAGAGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGGTGCTGGTCGTGTTGGGAAAATGCTTTTTGCACGGCAAGGGAAGAAGTTTGATTATGATCTAAAACAGgtaaaattagtctaagcactagttgattttgaagtcaacttttactggactgaattaacatatattattcattttcttaaaatttgtgatgtgtttcag
- - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGT