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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACTCAAGTGTTTGCTTGTGACAAATGATGAAATGCGAGATCACATTTTTGAACTCCTAGGAAGCAGCTTTTTTCTCAAATGGAAAGAAAGACATCAAgtatgtgctgtctaaattcctagtcttttatatgataaatttgctccttaccttttttctattttttgatcaatctttgttaatctgattttcagttatt...

Basic information

species Vitis vinifera
transcript Vv12s0035g01850.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390472|gb|EC955381.1|EC955381
EST:     TTGAACTCCTAGGAAGCAGCTTTTTTCTCAAATGGAAAGAAAGACATCAA                         GTTCGATATACATTCGT
genomic: TTGAACTCCTAGGAAGCAGCTTTTTTCTCAAATGGAAAGAAAGACATCAAgtatgtgctg ... cctttcgcagGTTCGATATACATTCGT
EST: gi|34545501|gb|CF513733.1|CF513733
EST:     TTGAACTCCTAGGAAGCAGCTTTTTTCTCAAATGGAAAGAAAGACATCAA                         GTTCGATATACATTCGTTAAGGGTAATGTGAAACTTCTGATGCCGCCTTCA
genomic: TTGAACTCCTAGGAAGCAGCTTTTTTCTCAAATGGAAAGAAAGACATCAAgtatgtgctg ... cctttcgcagGTTCGATATACATTCGTTAAGGGTAATGTGAAACTTCTGATGCCGCCTTCA
EST: gi|34319726|gb|CF372480.1|CF372480
EST:     TTGAACTCCTAGGAAGCAGCTTTTTTCTCAAATGGAAAGAAAGACATCAA                         GTTCGATATACATTCGTTAAGGGTAATGTGAAACTTCTGATGCCGCCTTCA
genomic: TTGAACTCCTAGGAAGCAGCTTTTTTCTCAAATGGAAAGAAAGACATCAAgtatgtgctg ... cctttcgcagGTTCGATATACATTCGTTAAGGGTAATGTGAAACTTCTGATGCCGCCTTCA
EST: gi|34545414|gb|CF513646.1|CF513646
EST:     TTGAACTCCTAGGAAGCAGCTTTTTTCTCAAATGGAAAGAAAGACATCAA                         GTTCGATATACATTCGTTAAGGGTAATGTGAAACTTCTGATGCCGCCTTCA
genomic: TTGAACTCCTAGGAAGCAGCTTTTTTCTCAAATGGAAAGAAAGACATCAAgtatgtgctg ... cctttcgcagGTTCGATATACATTCGTTAAGGGTAATGTGAAACTTCTGATGCCGCCTTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAACTCAAGTGTTTGCTTGTGACAAATGATGAAATGCGAGATCACATTTTTGAACTCCTAGGAAGCAGCTTTTTTCTCAAATGGAAAGAAAGACATCAAgtatgtgctgtctaaattcctagtcttttatatgataaatttgctccttaccttttttctattttttgatcaatctttgttaatctgattttcagttatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgataaa