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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaacattcatggttttccttttgttcctttgttgcatagagtgaaacttacagttatatttgttgctgcag

Basic information

species Vitis vinifera
transcript Vv12s0035g01130.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g01130.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G40330.1 (Glycine max), 5'ss of exon 4
GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtggg----acaacattca-tggttttccttttgttcctttg-ttgcatagagtgaaacttacag--ttatatttgttgctgcag--------------------------------------------------------------------------------------------------------------
||||| ||||||||||||||||||||||| ||||| |||||||||||||| || || || |||  |    |  | |  || || || |  ||  |||  |||     | |||        |||  |  ||| ||  | |  | ||                                                                                                               
GTTCCTGTGTTGGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtattattatagacagtgtttcttattcagtttttttaaccccttagtccatgttttaggggtttacatgagctaattcaataatgttcattttcgattattctcatggatggaatttagatatatctaggagtacgtggattattgtgattattttttttattatttttttgtgggttttttttctgcag

upper sequence: Vv12s0035g01130.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G00360.1 (Glycine max), 5'ss of exon 3
GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaacattcatggttttccttttgttcctttgttgcatagagtgaaacttacagttata--tttgttgctgcag
||||| || |||||||| || |||||||| || ||||||||||||||||| || |||||||||         ||| |  | ||       || ||||  |   ||   | |   | ||  || |   ||| |   | |||
GTTCCTGTCTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttcttttctttctattgtacgcttttcttttctttttaattttatcttcacttttgtgattttctcctttcag

upper sequence: Vv12s0035g01130.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G28670.1 (Glycine max), 5'ss of exon 3
GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaacattcatggttttccttttgttcctttgttgcatagagtgaaactt-acagttata--tttgttgctgcag
||||| || |||||||| || |||||||| || |||||||||||||| || || |||||||||  |    | ||| |  ||| | |||    | |||  |   |  | |  | ||| |   || |   ||| |   | |||
GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgttt-ctttctttctttccatttcacgcttttccttttttaattttatcttcatttttgtgattttctcttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351055139|gb|FQ440478.1|FQ440478
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCCCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|161712238|gb|FC061612.1|FC061612
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|110368464|gb|EC932441.1|EC932441
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|161719271|gb|FC068941.1|FC068941
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|110727170|gb|EE103626.1|EE103626
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|110385087|gb|EC949579.1|EC949579
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGGGTTACG                         TCACTCGATTGAAGGCTGACA
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACA
EST: gi|351042107|gb|FQ456317.1|FQ456317
EST:     GGAAACACCTGATGGCCCTGTATTTGAGAGCAATGCCATAGCCCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|110727691|gb|EE104738.1|EE104738
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|351017433|gb|FQ435786.1|FQ435786
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCCCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|110381916|gb|EC937999.1|EC937999
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|37183980|gb|CF603334.1|CF603334
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|37183445|gb|CF602799.1|CF602799
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|351028342|gb|FQ427238.1|FQ427238
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCCCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|110374475|gb|EC939254.1|EC939254
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|110381825|gb|EC935490.1|EC935490
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|110392524|gb|EC958004.1|EC958004
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|351025275|gb|FQ434288.1|FQ434288
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCCCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|71855580|gb|DT004635.1|DT004635
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|71859460|gb|DT008515.1|DT008515
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|71858356|gb|DT007411.1|DT007411
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|294965707|gb|GW839162.1|GW839162
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCACGTTATG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|34544508|gb|CF512740.1|CF512740
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|351027331|gb|FQ444580.1|FQ444580
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCCCGTTACG                         TCACTCGATTGAAGGCTGACAGCCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|161714380|gb|FC063221.1|FC063221
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|351016802|gb|FQ424229.1|FQ424229
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCCCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
EST: gi|352794288|gb|FQ479530.1|FQ479530
EST:     GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCCCGTTACG                         TCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT
genomic: GGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaac ... gttgctgcagTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaacattcatggttttccttttgttcctttgttgcatagagtgaaacttacagttatatttgttgctgcag

- - - - - - - - - - - - - - - - - -  AGAGCA